BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZC07RM1.SCF screened BAC_end
(994 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1335 751 0.0
>3x_Contig1335
Length = 8696
Score = 751 bits (379), Expect = 0.0
Identities = 454/471 (96%), Gaps = 6/471 (1%)
Strand = Plus / Minus
Query: 45 gcttgtgcttncatacactggaaaatttcaaatctttggtacttccctatgccatcaact 104
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 8575 gcttgtgctt-catacactggaaaacttcaaatctttggtacttccctatgccatcaact 8517
Query: 105 ttggtttattccttgcatttttattatacaatcgatcaattacattaggcgataaaagta 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8516 ttggtttattccttgcatttttattatacaatcgatcaattacattaggcgataaaagta 8457
Query: 165 accatgttgcaggattgcacatcgtacaatttttctattgcttgatgtttattgctttct 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8456 accatgttgcaggattgcacatcgtacaatttttctattgcttgatgtttattgctttct 8397
Query: 225 ttagcgtaccggtatggttttcaaagcaagtcactctatcgtacttgatcaggtttgtca 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8396 ttagcgtaccggtatggttttcaaagcaagtcactctatcgtacttgatcaggtttgtca 8337
Query: 285 tgaaccctgtaaagtatctattggagttattggggattatgttgataatacggtacttca 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8336 tgaaccctgtaaagtatctattggagttattggggattatgttgataatacggtacttca 8277
Query: 345 cagtggtacatccattccttctagctgataatcgtcatatcaccttttaccttatcaaaa 404
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 8276 cagtggtacatccattccttctagctgataatcgtcatatcaccttttacctattcaaaa 8217
Query: 405 aactgatcggaagaagtagttttgttcaagttttgtgtgaagggcttcaatttattattt 464
||||||||||||||||||| ||||||||||| ||||||| | |||| |||||||| | ||
Sbjct: 8216 aactgatcggaagaagtag-tttgttcaagtattgtgtg-atggctccaatttatca-tt 8160
Query: 465 tttccgcgtatgtctacccttgaattaaggagaccttaccacgatgatatt 515
| |||||||||||||| ||||||| ||| |||||| || ||||||||||||
Sbjct: 8159 tctccgcgtatgtcta-ccttgaagtaatgagacc-tagcacgatgatatt 8111
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9754
Number of Sequences: 1807
Number of extensions: 9754
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 994
length of database: 10,358,551
effective HSP length: 16
effective length of query: 978
effective length of database: 10,329,639
effective search space: 10102386942
effective search space used: 10102386942
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)