BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZC08RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1627 959 0.0
>3x_Contig1627
Length = 15708
Score = 959 bits (484), Expect = 0.0
Identities = 562/580 (96%), Gaps = 6/580 (1%)
Strand = Plus / Minus
Query: 47 gtgctaattgtttgaattgagagtctcccagcacaaaattttctctcaaagtctgctcat 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2443 gtgctaattgtttgaattgagagtctcccagcacaaaattttctctcaaagtctgctcat 2384
Query: 107 cgttcaattcagtgaaaacactggaacgactgaaatcgtcagctatggcttgcattgtaa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2383 cgttcaattcagtgaaaacactggaacgactgaaatcgtcagctatggcttgcattgtaa 2324
Query: 167 taggatgcgtatataaattggataaatcttcctcgtttcaatttatgacaaatttagtcc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2323 taggatgcgtatataaattggataaatcttcctcgtttcaatttatgacaaatttagtcc 2264
Query: 227 aaagttgattcaagtagatgctaaatcctgattgtatattatgacttctttcttcttctt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2263 aaagttgattcaagtagatgctaaatcctgattgtatattatgacttctttcttcttctt 2204
Query: 287 taactgtacccttttgccactcaaggctctaattgtttaagttcatataatctcagaatg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2203 taactgtacccttttgccactcaaggctctaattgtttaagttcatataatctcagaatg 2144
Query: 347 aaggttgtaattcgggtttgatatcaacgattgtatgggactgtcaaatgtgtagggtaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2143 aaggttgtaattcgggtttgatatcaacgattgtatgggactgtcaaatgtgtagggtaa 2084
Query: 407 cgatacatcatccgtacattctctaaagtatccagaattccaaattcatggtgtacggat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2083 cgatacatcatccgtacattctctaaagtatccagaattccaaattcatggtgtacggat 2024
Query: 467 gggtaaattaaaagtgtgtacatgatattattactatataggggttatttagtccctgag 526
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 2023 ggttaaattaaaagtgtgtacatgatattattactatata-gggttatttagtccgtgag 1965
Query: 527 actcataacttcgctgggccgataaggccgattagaaacatcatctaataccacaattta 586
||||||||| |||||| | || ||||| |||| ||| |||||||||||||| ||||| ||
Sbjct: 1964 actcataac-tcgctgtg-cggtaagggcgatgagagacatcatctaatacgacaatata 1907
Query: 587 atttcccgttcctggtggatcatttgggtcttgctactgc 626
| ||||||| | |||| |||||||||| || |||||||||
Sbjct: 1906 a-ttcccgtccttggt-gatcatttggttc-tgctactgc 1870
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,166
Number of Sequences: 1807
Number of extensions: 18166
Number of successful extensions: 2248
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)