BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC27ZC09FM1.SCF screened BAC_end (904 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1291 981 0.0 3x_Contig351 165 2e-40 >3x_Contig1291 Length = 6514 Score = 981 bits (495), Expect = 0.0 Identities = 552/567 (97%), Gaps = 3/567 (0%) Strand = Plus / Plus Query: 179 ttggggtgttagacctctcaaatatgaattttccactattcccttggattcaggagaata 238 ||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||| Sbjct: 19 ttggggtgttagacctctcaaatatgaatttaccacgaaacccttggattcaggagaata 78 Query: 239 atcgtctttggagaaatgtggaagagtacgatcagcgaaaccgaaagcaatacgtttacc 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79 atcgtctttggagaaatgtggaagagtacgatcagcgaaaccgaaagcaatacgtttacc 138 Query: 299 ttcaacagattgttgaccaacacatgcagacatttgagcgatattaataaaggaaccctt 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 139 ttcaacagattgttgaccaacacatgcagacatttgagcgatattaataaaggaaccctt 198 Query: 359 cgaccccgcactaaccatctgcttgacgttatttaaatctttcaagttgacttctgctga 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 199 cgaccccgcactaaccatctgcttgacgttatttaaatctttcaagttgacttctgctga 258 Query: 419 acgaccagctttatctctagcttcgtttagataacgaacgacattatcttcgaacgattc 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 259 acgaccagctttatctctagcttcgtttagataacgaacgacattatcttcgaacgattc 318 Query: 479 acgcaatgtcataccgtgttttgccgttaataagttcgcttgagcctctttcgtgacatc 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 319 acgcaatgtcataccgtgttttgccgttaataagttcgcttgagcctctttcgtgacatc 378 Query: 539 ttcgaccttcttcttggcaacagcgatagcttcagtaatctccctcatggttttctcatc 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 379 ttcgaccttcttcttggcaacagcgatagcttcagtaatctccctcatggttttctcatc 438 Query: 599 agccatggtatcaccaata-caatggagaaaccatattgc-agagccagtaattgac-ac 655 ||| ||||||||||||||| ||||||||||||||| ||| |||||||||||||||| || Sbjct: 439 agcaatggtatcaccaataccaatggagaaaccattatgcaagagccagtaattgacaac 498 Query: 656 ctttttgatgttactgaagagtcttgcgcaaatttcaggtcccttttttttcgtaaccac 715 ||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct: 499 cttttggatgttactgaagagtcttgcgcaaatttcaggtcccttttctctcgtaaccac 558 Query: 716 ctggatttaaccaccactagatgaacc 742 |||||| ||||||||||||||||||| Sbjct: 559 gtggattaaaccaccactagatgaacc 585 >3x_Contig351 Length = 1152 Score = 165 bits (83), Expect = 2e-40 Identities = 83/83 (100%) Strand = Plus / Minus Query: 85 tgaccaaacgacgttgaatataacctgtttcagctgttttcacggcggtatcgattaaac 144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 83 tgaccaaacgacgttgaatataacctgtttcagctgttttcacggcggtatcgattaaac 24 Query: 145 cttcacgaccacccattgcgtgg 167 ||||||||||||||||||||||| Sbjct: 23 cttcacgaccacccattgcgtgg 1 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6488 Number of Sequences: 1807 Number of extensions: 6488 Number of successful extensions: 39 Number of sequences better than 1.0e-20: 2 length of query: 904 length of database: 10,358,551 effective HSP length: 16 effective length of query: 888 effective length of database: 10,329,639 effective search space: 9172719432 effective search space used: 9172719432 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)