BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC27ZC09FM1.SCF screened BAC_end
         (904 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1291                                                         981   0.0  
3x_Contig351                                                          165   2e-40

>3x_Contig1291 
          Length = 6514

 Score =  981 bits (495), Expect = 0.0
 Identities = 552/567 (97%), Gaps = 3/567 (0%)
 Strand = Plus / Plus

                                                                       
Query: 179 ttggggtgttagacctctcaaatatgaattttccactattcccttggattcaggagaata 238
           ||||||||||||||||||||||||||||||| |||| |  ||||||||||||||||||||
Sbjct: 19  ttggggtgttagacctctcaaatatgaatttaccacgaaacccttggattcaggagaata 78

                                                                       
Query: 239 atcgtctttggagaaatgtggaagagtacgatcagcgaaaccgaaagcaatacgtttacc 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  atcgtctttggagaaatgtggaagagtacgatcagcgaaaccgaaagcaatacgtttacc 138

                                                                       
Query: 299 ttcaacagattgttgaccaacacatgcagacatttgagcgatattaataaaggaaccctt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 ttcaacagattgttgaccaacacatgcagacatttgagcgatattaataaaggaaccctt 198

                                                                       
Query: 359 cgaccccgcactaaccatctgcttgacgttatttaaatctttcaagttgacttctgctga 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 cgaccccgcactaaccatctgcttgacgttatttaaatctttcaagttgacttctgctga 258

                                                                       
Query: 419 acgaccagctttatctctagcttcgtttagataacgaacgacattatcttcgaacgattc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 acgaccagctttatctctagcttcgtttagataacgaacgacattatcttcgaacgattc 318

                                                                       
Query: 479 acgcaatgtcataccgtgttttgccgttaataagttcgcttgagcctctttcgtgacatc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 acgcaatgtcataccgtgttttgccgttaataagttcgcttgagcctctttcgtgacatc 378

                                                                       
Query: 539 ttcgaccttcttcttggcaacagcgatagcttcagtaatctccctcatggttttctcatc 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttcgaccttcttcttggcaacagcgatagcttcagtaatctccctcatggttttctcatc 438

                                                                       
Query: 599 agccatggtatcaccaata-caatggagaaaccatattgc-agagccagtaattgac-ac 655
           ||| ||||||||||||||| |||||||||||||||  ||| |||||||||||||||| ||
Sbjct: 439 agcaatggtatcaccaataccaatggagaaaccattatgcaagagccagtaattgacaac 498

                                                                       
Query: 656 ctttttgatgttactgaagagtcttgcgcaaatttcaggtcccttttttttcgtaaccac 715
           ||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 499 cttttggatgttactgaagagtcttgcgcaaatttcaggtcccttttctctcgtaaccac 558

                                      
Query: 716 ctggatttaaccaccactagatgaacc 742
            |||||| |||||||||||||||||||
Sbjct: 559 gtggattaaaccaccactagatgaacc 585


>3x_Contig351 
          Length = 1152

 Score =  165 bits (83), Expect = 2e-40
 Identities = 83/83 (100%)
 Strand = Plus / Minus

                                                                       
Query: 85  tgaccaaacgacgttgaatataacctgtttcagctgttttcacggcggtatcgattaaac 144
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  tgaccaaacgacgttgaatataacctgtttcagctgttttcacggcggtatcgattaaac 24

                                  
Query: 145 cttcacgaccacccattgcgtgg 167
           |||||||||||||||||||||||
Sbjct: 23  cttcacgaccacccattgcgtgg 1


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6488
Number of Sequences: 1807
Number of extensions: 6488
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 2
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)