BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC27ZC09RM1.SCF screened BAC_end
         (940 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1741                                                        1227   0.0  

>3x_Contig1741 
          Length = 21706

 Score = 1227 bits (619), Expect = 0.0
 Identities = 700/718 (97%), Gaps = 7/718 (0%)
 Strand = Plus / Plus

                                                                        
Query: 49   aacaattctaatttggccctctttcaaagcaatgatagagacaatcaactcgacagcatt 108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3129 aacaattctaatttggccctctttcaaagcaatgatagagacaatcaactcgacagcatt 3188

                                                                        
Query: 109  acctagagttgcattcaacaacccacctaaggtactaccggccttttcagaaagctgttc 168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3189 acctagagttgcattcaacaacccacctaaggtactaccggccttttcagaaagctgttc 3248

                                                                        
Query: 169  agttgcaaaggctaggattgctgctaatgggataatggccatgaaattgaatacgaaaac 228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3249 agttgcaaaggctaggattgctgctaatgggataatggccatgaaattgaatacgaaaac 3308

                                                                        
Query: 229  ccaggtggtagataactgtccatatccgaagattaatcctagcggaacaaaaacgagcaa 288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3309 ccaggtggtagataactgtccatatccgaagattaatcctagcggaacaaaaacgagcaa 3368

                                                                        
Query: 289  atagtttaccggagacgaatggaacactactttggaaacttcaatacatcttaccaacgc 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3369 atagtttaccggagacgaatggaacactactttggaaacttcaatacatcttaccaacgc 3428

                                                                        
Query: 349  agaagaggatctgcggatacc-ggctccagtagatgacaataaaggtgcagacgaatcca 407
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 3429 agaagaggatctgcggataccgggctccagtagatgacaataaaggtgcagacgaatcca 3488

                                                                        
Query: 408  tggtattttgagttaattgttcagaaatatagacaccagactgtctctcagaaagtaatc 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3489 tggtattttgagttaattgttcagaaatatagacaccagactgtctctcagaaagtaatc 3548

                                                                        
Query: 468  agggttcaccttgtttttaacggttcgatcaaaaaagaatttaactccagttgctcggct 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3549 agggttcaccttgtttttaacggttcgatcaaaaaagaatttaactccagttgctcggct 3608

                                                                        
Query: 528  aaaatcagagaaatgtcaggcaactttaccaaagtctaaagctgaacttaggatgagaag 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3609 aaaatcagagaaatgtcaggcaactttaccaaagtctaaagctgaacttaggatgagaag 3668

                                                                        
Query: 588  ctgtgtaatgaatttaatcctttctaaacagcgcaaacttcagacctttgagagacatga 647
            ||||||||||||||||||||||   |||||||||||||||||||||||  ||||||||||
Sbjct: 3669 ctgtgtaatgaatttaatccttctaaaacagcgcaaacttcagaccttgaagagacatga 3728

                                                                        
Query: 648  tatttnttatctttttcatgcaattaattatacttttttagaaaaaacattagccattat 707
            ||||| ||||||||||||||||||||||||||| ||||||| |||||||| || || || 
Sbjct: 3729 tattttttatctttttcatgcaattaattatac-tttttaggaaaaacataag-caatag 3786

                                                                      
Query: 708  tgcagaaaatgcccaaggcttcaaggcctttttcctgaggtacccaaattgaaacttt 765
            ||||||||||| ||||||| |||||||| | ||||||||||| |||||||||||||||
Sbjct: 3787 tgcagaaaatg-ccaaggc-tcaaggcc-tcttcctgaggta-ccaaattgaaacttt 3840


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6803
Number of Sequences: 1807
Number of extensions: 6803
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)