BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZC11FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1438 1178 0.0
>3x_Contig1438
Length = 9247
Score = 1178 bits (594), Expect = 0.0
Identities = 669/690 (96%), Gaps = 3/690 (0%)
Strand = Plus / Minus
Query: 92 gccacaagttagtaaacattgtgcagaagaactgttatttataattgactgtcttgtcac 151
||||||||| ||||||||||||||||||||||||||||||||||||| || |||| ||||
Sbjct: 6065 gccacaagtaagtaaacattgtgcagaagaactgttatttataattgtctctcttttcac 6006
Query: 152 ttctattaaacaaaaagagatatcccacgcagttgataagccaaaagtccagttaaacaa 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6005 ttctattaaacaaaaagagatatcccacgcagttgataagccaaaagtccagttaaacaa 5946
Query: 212 aaattgtgatc-attttggaatgactggactccaggtaggaaacaacaacccagatcaac 270
||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 5945 aaattgtgaaccacaatggaatgactagactccaggtaggaaacaacaacccagatcaac 5886
Query: 271 taatcaatggttcaagataatccttgcaacctttactcttttaaatgtcaaaaattaaca 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5885 taatcaatggttcaagataatccttgcaacctttactcttttaaatgtcaaaaattaaca 5826
Query: 331 ttaacaaaagtagtattccaatttttcaatttaaaaatgaaaacaattttttcgagttct 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5825 ttaacaaaagtagtattccaatttttcaatttaaaaatgaaaacaattttttcgagttct 5766
Query: 391 agaatgcgccaataaaatgaaagtcgaaaatacaaactcgcgcagaatatatacgcaatg 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5765 agaatgcgccaataaaatgaaagtcgaaaatacaaactcgcgcagaatatatacgcaatg 5706
Query: 451 gcgaaacaattgggaatcgtcaagccgttgaagttgtgtctggggtcctataccaattga 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5705 gcgaaacaattgggaatcgtcaagccgttgaagttgtgtctggggtcctataccaattga 5646
Query: 511 gtgaccaagagagcgttatttttcatgtgtaatttttcctctttattttaaactatttga 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5645 gtgaccaagagagcgttatttttcatgtgtaatttttcctctttattttaaactatttga 5586
Query: 571 atacgtaaagaatgaagttaagttgatcacgtgtaacatgattacccggagatgtgcctg 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5585 atacgtaaagaatgaagttaagttgatcacgtgtaacatgattacccggagatgtgcctg 5526
Query: 631 gtgtcttccgttattcatgttaacgcattaatgatcgaaccgccacatattttaagatta 690
||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| |
Sbjct: 5525 gtgtcttccgttattcaagttaacgcattaatgatagaaccgccacatatttcaagataa 5466
Query: 691 tgaccccagtttgcgtggattatacttgcccc-acggaaacacttttggcaccttgacac 749
|||||||||| |||||| || ||||||||||| ||||||||||||| |||||||||||||
Sbjct: 5465 tgaccccagtatgcgtgtatcatacttgccccaacggaaacactttaggcaccttgacac 5406
Query: 750 gaaaactattgtcaactttttgcggtaact 779
|||||||| ||||||| |||||||||||||
Sbjct: 5405 gaaaactagtgtcaac-ttttgcggtaact 5377
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7701
Number of Sequences: 1807
Number of extensions: 7701
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)