BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZC11RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1775 1294 0.0
>3x_Contig1775
Length = 26320
Score = 1294 bits (653), Expect = 0.0
Identities = 740/765 (96%), Gaps = 3/765 (0%)
Strand = Plus / Minus
Query: 49 ttgatagtgtcagaattggttttacgaaatgtcgggtaaagctgctaaaggaaacaaaga 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14029 ttgatagtgtcagaattggttttacgaaatgtcgggtaaagctgctaaaggaaacaaaga 13970
Query: 109 acgccagctggaactgaactacttatatagtgataagattggagagatgatatatgatgg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13969 acgccagctggaactgaactacttatatagtgataagattggagagatgatatatgatgg 13910
Query: 169 cacttgcttaatttttaaaaacatgccacctcgtgcaaatgatgaggcttctcctccctt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13909 cacttgcttaatttttaaaaacatgccacctcgtgcaaatgatgaggcttctcctccctt 13850
Query: 229 attcactgagttaacccatacatcggccatgccctaacccaaaatttcccctaaagctac 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13849 attcactgagttaacccatacatcggccatgccctaacccaaaatttcccctaaagctac 13790
Query: 289 agtaagatattttaaagattccaaagcataacatccctatgtactgcggtacttgctatt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13789 agtaagatattttaaagattccaaagcataacatccctatgtactgcggtacttgctatt 13730
Query: 349 agccggaagaacgttgagaagcagcgagcagttcaaagagggatagtgctggggtaaagg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13729 agccggaagaacgttgagaagcagcgagcagttcaaagagggatagtgctggggtaaagg 13670
Query: 409 acgatccacaaatagaagaccgatatcccccaatcttagtaaagttgacacataatatta 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13669 acgatccacaaatagaagaccgatatcccccaatcttagtaaagttgacacataatatta 13610
Query: 469 cttaatactgacagccaattatgtggttcagtctttctgaataagtctcactctggttgt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13609 cttaatactgacagccaattatgtggttcagtctttctgaataagtctcactctggttgt 13550
Query: 529 gaggctgcccctgcatcctctccaccctcgacataacatgcattaagtatgcggtgtacg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13549 gaggctgcccctgcatcctctccaccctcgacataacatgcattaagtatgcggtgtacg 13490
Query: 589 agaattgccaatttctggattacctaagcaaactgacgcagcttgtaaaaaaacgcatca 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13489 agaattgccaatttctggattacctaagcaaactgacgcagcttgtaaaaaaacgcatca 13430
Query: 649 aaaaatggtgagagcaaacaaaatactgtttaagaggttagttcgggacgtgaggtaggt 708
||||||||||||||||||||||| ||||| | |||||||| ||| |||||||||||||
Sbjct: 13429 aaaaatggtgagagcaaacaaaagactgtaaagaaggttagtacggaacgtgaggtaggt 13370
Query: 709 tttctgaatg-gtttttaatcattatttatttacctttttgtatttacattttctgtacc 767
|||||||||| ||| |||||||||| |||||| | | |||||||||| | |||||| |
Sbjct: 13369 tttctgaatgtcatttaaatcattattaatttacatatctgtatttaca-tatctgtagc 13311
Query: 768 ccaatttgatagtgttatagtagggaaatatactgttgaggtagt 812
||||||||||||| || ||||| | ||| ||||||||||||||
Sbjct: 13310 gcaatttgatagtg-taaagtagtggaattaactgttgaggtagt 13267
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6097
Number of Sequences: 1807
Number of extensions: 6097
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)