BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZC12FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig904 1136 0.0
>3x_Contig904
Length = 3319
Score = 1136 bits (573), Expect = 0.0
Identities = 649/669 (97%), Gaps = 4/669 (0%)
Strand = Plus / Plus
Query: 86 aatgatacctgtagctgtcaagagaatcaaagacgtcggtttatagcaggatatattatt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2462 aatgatacctgtagctgtcaagagaatcaaagacgtcggtttatagcaggatatattatt 2521
Query: 146 agagtgtgttgaagaatgagtttttctacgggctcttcttcgaagagtacctcatcggta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2522 agagtgtgttgaagaatgagtttttctacgggctcttcttcgaagagtacctcatcggta 2581
Query: 206 gtggttgttgattttccaaagccattcattcaggaagatgatcacacgaacagcgagaat 265
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2582 gtggttgttgatgttccaaagccattcattcaggaagatgatcacacgaacagcgagaat 2641
Query: 266 gtagtaccatttgatcagtctgtgatagagtgtcgagatgctaacaatgaggaacaggaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2642 gtagtaccatttgatcagtctgtgatagagtgtcgagatgctaacaatgaggaacaggaa 2701
Query: 326 gctggtgggttcatttcaagagtttctactaaattggagaattatcacaaagagtccgtt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2702 gctggtgggttcatttcaagagtttctactaaattggagaattatcacaaagagtccgtt 2761
Query: 386 ctattgaatcaggaaaatatagaacttccagtctacgataacgacttatttgatcctttg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2762 ctattgaatcaggaaaatatagaacttccagtctacgataacgacttatttgatcctttg 2821
Query: 446 tccagagctgctacacaggatgttgtttctaggcgaaatacctgtcgtaaggattctgta 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2822 tccagagctgctacacaggatgttgtttctaggcgaaatacctgtcgtaaggattctgta 2881
Query: 506 gagggaagtataccagaaattgaagatgatgggttatacaatgcggatgatattattgat 565
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2882 gagggaagtataccagaaattgaagatgatgggttatacaatgcggatgatattatagat 2941
Query: 566 cctccgccagatggtggatatggatggatttgctgtgcatgtgttgtgggaatgaatttt 625
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2942 cctccgccagatggtggatatggatggatttgctgtgcatgtgttgtggtaatgaatttc 3001
Query: 626 tgt-catggggacctcatacgggttagggggggtttttattgtactatttggctt-ggat 683
||| ||||||||||| ||||| |||| || | |||| ||| |||||||||| ||| | ||
Sbjct: 3002 tgtacatggggacctaatacgtgttatggtgtgtttctatcgtactatttgtcttcgaat 3061
Query: 684 tattttcccaaggcaactccgaccgatttttgca-tcatcggaggtttgatcctttggtt 742
||||||||||| |||||||||||||| ||||||| |||||||||||||||| ||| ||||
Sbjct: 3062 tattttcccaatgcaactccgaccga-ttttgcagtcatcggaggtttgatgcttgggtt 3120
Query: 743 gactttgtt 751
|||||||||
Sbjct: 3121 gactttgtt 3129
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7362
Number of Sequences: 1807
Number of extensions: 7362
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)