BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC27ZC12RM1.SCF screened BAC_end
         (941 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig917                                                          975   0.0  

>3x_Contig917 
          Length = 3433

 Score =  975 bits (492), Expect = 0.0
 Identities = 541/552 (98%), Gaps = 4/552 (0%)
 Strand = Plus / Plus

                                                                        
Query: 42   gcttgagcaattaccggccgaatttcatcttttcctagacgtctccgtttctgacccatc 101
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1905 gcttgagcaattaccggccgaatctcatcttttcctagacgtctccgtttctgacccatc 1964

                                                                        
Query: 102  atcatcgttttgtcagagctttcgactatcttgtttagctacttctacttctctacctta 161
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1965 atcatcgttttgtcagagctttcgactatcttgtttagctacttctacttctctacctta 2024

                                                                        
Query: 162  gcttcttttcgttctccaccggtactttcactatatttctttttgcttaatatctatttt 221
            |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 2025 gcttcttttcgttctccaccggtactttcactatatttctttttgcttaataccaatttt 2084

                                                                        
Query: 222  caattctggctttctgcagactgcgagcgatctcagacattacgcagattccatgtctgg 281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2085 caattctggctttctgcagactgcgagcgatctcagacattacgcagattccatgtctgg 2144

                                                                        
Query: 282  aatacagatttcaatttgttatatattcaactatgaatctttttaagttttccgttcctt 341
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2145 aatacagatttcaatttgttatatattcaactatgaatctttttaagttttccgttcctt 2204

                                                                        
Query: 342  ctgcacgaagtaagggccctattcctgtccgtgggtttgggcttggggttttgcttgtta 401
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2205 ctgcacgaagtaagggccctattcctgtccgtgggtttgggcttggggttttgcttgtta 2264

                                                                        
Query: 402  ctttgttattatatatagcatacgtatatttttatatatatgtatgaaaatattaaaagt 461
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2265 ctttgttattatatatagcatacgtatatttttatatatatgtatgaaaatattaaaagt 2324

                                                                        
Query: 462  cgatgagctagattaacaaagaccgaattagtactgaacagtctgacctctgatcaagtt 521
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2325 cgatgagctagattaacaaagaccgaattagtactgaacagtctgacctctgatcaagtt 2384

                                                                        
Query: 522  atctgtcaagcttttattttatcttaacgattcttttgtcaccctaatttggctgggctt 581
            ||||||||||| ||||| ||||||||||||| | ||||||| |||||||| ||| ||| |
Sbjct: 2385 atctgtcaagc-tttatattatcttaacgatac-tttgtcaacctaattt-gcttggc-t 2440

                        
Query: 582  ttgatttaaccc 593
            ||||||||||||
Sbjct: 2441 ttgatttaaccc 2452


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,106
Number of Sequences: 1807
Number of extensions: 18106
Number of successful extensions: 2353
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)