BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC27ZC12RM1.SCF screened BAC_end (941 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig917 975 0.0 >3x_Contig917 Length = 3433 Score = 975 bits (492), Expect = 0.0 Identities = 541/552 (98%), Gaps = 4/552 (0%) Strand = Plus / Plus Query: 42 gcttgagcaattaccggccgaatttcatcttttcctagacgtctccgtttctgacccatc 101 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1905 gcttgagcaattaccggccgaatctcatcttttcctagacgtctccgtttctgacccatc 1964 Query: 102 atcatcgttttgtcagagctttcgactatcttgtttagctacttctacttctctacctta 161 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1965 atcatcgttttgtcagagctttcgactatcttgtttagctacttctacttctctacctta 2024 Query: 162 gcttcttttcgttctccaccggtactttcactatatttctttttgcttaatatctatttt 221 |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct: 2025 gcttcttttcgttctccaccggtactttcactatatttctttttgcttaataccaatttt 2084 Query: 222 caattctggctttctgcagactgcgagcgatctcagacattacgcagattccatgtctgg 281 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2085 caattctggctttctgcagactgcgagcgatctcagacattacgcagattccatgtctgg 2144 Query: 282 aatacagatttcaatttgttatatattcaactatgaatctttttaagttttccgttcctt 341 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2145 aatacagatttcaatttgttatatattcaactatgaatctttttaagttttccgttcctt 2204 Query: 342 ctgcacgaagtaagggccctattcctgtccgtgggtttgggcttggggttttgcttgtta 401 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2205 ctgcacgaagtaagggccctattcctgtccgtgggtttgggcttggggttttgcttgtta 2264 Query: 402 ctttgttattatatatagcatacgtatatttttatatatatgtatgaaaatattaaaagt 461 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2265 ctttgttattatatatagcatacgtatatttttatatatatgtatgaaaatattaaaagt 2324 Query: 462 cgatgagctagattaacaaagaccgaattagtactgaacagtctgacctctgatcaagtt 521 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2325 cgatgagctagattaacaaagaccgaattagtactgaacagtctgacctctgatcaagtt 2384 Query: 522 atctgtcaagcttttattttatcttaacgattcttttgtcaccctaatttggctgggctt 581 ||||||||||| ||||| ||||||||||||| | ||||||| |||||||| ||| ||| | Sbjct: 2385 atctgtcaagc-tttatattatcttaacgatac-tttgtcaacctaattt-gcttggc-t 2440 Query: 582 ttgatttaaccc 593 |||||||||||| Sbjct: 2441 ttgatttaaccc 2452 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,106 Number of Sequences: 1807 Number of extensions: 18106 Number of successful extensions: 2353 Number of sequences better than 1.0e-20: 1 length of query: 941 length of database: 10,358,551 effective HSP length: 16 effective length of query: 925 effective length of database: 10,329,639 effective search space: 9554916075 effective search space used: 9554916075 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)