BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZD01RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1165 1388 0.0
>3x_Contig1165
Length = 4837
Score = 1388 bits (700), Expect = 0.0
Identities = 768/784 (97%), Gaps = 5/784 (0%)
Strand = Plus / Minus
Query: 46 gctttaaagtcactaatcgcagatttggacatagaaaaccaatacgttgcaaatggcaat 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 gctttaaagtcactaatcgcagatttggacatagaaaaccaatacgttgcaaatggcaat 852
Query: 106 aactaccgtttctctccagataacgcactcctgaagcttcttatgtcattcgacactata 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 aactaccgtttctctccagataacgcactcctgaagcttcttatgtcattcgacactata 792
Query: 166 gcacccaccaagcaggttgaaatcgcaaacgcctttcttcagatactacaaaaggctaca 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 gcacccaccaagcaggttgaaatcgcaaacgcctttcttcagatactacaaaaggctaca 732
Query: 226 gacacctcggacttaaaaacactaggaaaagttctttggatactaacgtcaaatgtggga 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gacacctcggacttaaaaacactaggaaaagttctttggatactaacgtcaaatgtggga 672
Query: 286 cattctaccacttcaatgctctgctgcatctcgccaggtccatttatcaatgcagtagtt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 cattctaccacttcaatgctctgctgcatctcgccaggtccatttatcaatgcagtagtt 612
Query: 346 aagttcctagaaaagcaacaaaggaattccacagtatcgagctctgatgaaccagatttt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aagttcctagaaaagcaacaaaggaattccacagtatcgagctctgatgaaccagatttt 552
Query: 406 gattctcttcatagttatgtcacatatgggatggctctatcatttgttgtttttctgaag 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gattctcttcatagttatgtcacatatgggatggctctatcatttgttgtttttctgaag 492
Query: 466 actacatatgactttgatattgaaccttttattcaaaatttcgaagaatcatacactttg 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 actacatatgactttgatattgaaccttttattcaaaatttcgaagaatcatacactttg 432
Query: 526 aagttcctttctttaattgaagacatttcggatatctttgtgttacagaatgaatcggca 585
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aagttcctttcttcaattgaagacatttcggatatctttgtgttacagaatgaatcggca 372
Query: 586 gaaggatccaaattatatcttcaaaactggttacgagaccttttcattaatggatcaatc 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gaaggatccaaattatatcttcaaaactggttacgagaccttttcattaatggatcaatc 312
Query: 646 agtgactctcaaatgaagaacaccaatgttaaagatctcatcaatcttattccatttatc 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agtgactctcaaatgaagaacaccaatgttaaagatctcatcaatcttattccatttatc 252
Query: 706 tttaaacaaaacgtaattgctggtccaggca-gtgttggtgtaaaaattcctgaatttga 764
|||||||||| |||||||||| ||||||||| ||||| |||| ||| | ||||||||||
Sbjct: 251 tttaaacaaagcgtaattgct-gtccaggcaggtgtt-gtgtcaaatattctgaatttga 194
Query: 765 ctagcggctttggaaattttttacaaaccgttcctttatgccaggattgattaaaatttt 824
|||||||||||| | |||| |||| ||||||||| |||||||||||||||| |||||| |
Sbjct: 193 ctagcggctttgaatatttcttac-aaccgttcc-ttatgccaggattgataaaaattat 136
Query: 825 gttc 828
||||
Sbjct: 135 gttc 132
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8607
Number of Sequences: 1807
Number of extensions: 8607
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)