BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZD02FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1412 1092 0.0
>3x_Contig1412
Length = 7639
Score = 1092 bits (551), Expect = 0.0
Identities = 630/651 (96%), Gaps = 4/651 (0%)
Strand = Plus / Minus
Query: 84 cgaaatcatcctttagttccttaacaaggttgacataacgattgtattcttcttcattca 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4519 cgaaatcatcctttagttccttaacaaggttgacataacgattgtattcttcttcattca 4460
Query: 144 tgccactattgtacgtttcatcggtagttatcgactcatatgcatatactacaaaagaat 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4459 tgccactattgtacgtttcatcggtagttatcgactcatatgcatatactacaaaagaat 4400
Query: 204 gtagttctctgactttattataccagaaagcaccatgttcaatcataacatcgggcttta 263
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4399 gtagttctctgacgttagtataccagaaagcaccatgttcaatcataacatcgggcttta 4340
Query: 264 aattagagattatcttttgtatggcatctaaaacttcagctaagaaagtttcactttgcg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4339 aattagagattatcttttgtatggcatctaaaacttcagctaagaaagtttcactttgcg 4280
Query: 324 aggttaaacccaatctccacatatcacttagaataataataagaacccttgatggataca 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4279 aggttaaacccaatctccacatatcacttagaataataataagaacccttgatggataca 4220
Query: 384 aaacttcttttcttgtcaagttcacagagacaccagttggaggaactttgccacccttca 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4219 aaacttcttttcttgtcaagttcacagagacaccagttggaggaactttgccacccttca 4160
Query: 444 agagtccctcgatgatttcagtattgagggatctcgaatcttcgaacattttgtatagct 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4159 agagtccctcgatgatttcagtattgagggatctcgaatcttcgaacattttgtatagct 4100
Query: 504 catcattaatttgagacattaacgctgaaacatcttcagtattgaagttattgtttatgg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4099 catcattaatttgagacattaacgctgaaacatcttcagtattgaagttattgtttatgg 4040
Query: 564 aaacaacattcaatttgttttggagaagagccatcattcaaagtactatttgccgagaag 623
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4039 aaacaacattcaa-ttgttttggagaagagccatcattcaaagtactatttgccgagaag 3981
Query: 624 cgcctgttttttaccggattagcggtgatgccctctcttactttaccacca-aacgcatt 682
|||||||||||||||||| ||||| ||||||| ||| ||| | ||||| | |||||
Sbjct: 3980 cgcctgttttttaccggagtagcgttgatgcctcctcctacatatacaccagagcgcata 3921
Query: 683 aaggactgt-aacgtgccacttccttctttaaa-aaaaaactttttttttt 731
|||||||| ||||||| ||||||| ||||||| ||||||||| |||||||
Sbjct: 3920 gaggactgtaaacgtgcaacttcctcctttaaagaaaaaacttcttttttt 3870
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,761
Number of Sequences: 1807
Number of extensions: 15761
Number of successful extensions: 161
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)