BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZD02RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1184 1076 0.0
>3x_Contig1184
Length = 5183
Score = 1076 bits (543), Expect = 0.0
Identities = 631/651 (96%), Gaps = 7/651 (1%)
Strand = Plus / Plus
Query: 183 gtccaaagaccattgctcaaattcacgaagaagaagccttgaagagggctttggaggaaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gtccaaagaccattgctcaaattcacgaagaagaagccttgaagagggctttggaggaaa 72
Query: 243 gagaaagagaaagagatcgccatgggtccagaggtggttccagacgtatgaa-tagcgag 301
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 73 gagaaagagaaagagatcgccatgggtccagaggtggttccagacgtatgaaatagcgag 132
Query: 302 agaaactcttctagaagagatttctcctctcattctcacagtcacaatcaaaatagagac 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 agaaactcttctagaagagatttctcctctcattctcacagtcacaatcaaaatagagac 192
Query: 362 ggtttcactactaccagatcgtcatcagtgagatattctgagccaaagaaggaagaacaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtttcactactaccagatcgtcatcagtgagatattctgagccaaagaaggaagaacaa 252
Query: 422 gctccaactccaactaaatcttctggtggcgctgccaacatgtttgatgcattgatggat 481
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 253 gctccaactccaactaaatcttctggtg-cgctgccaacatgtttgatgcattgatggat 311
Query: 482 gccgaagatgattaagtttgatagaaattacctcgagttattttaccttcaaccctccca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gccgaagatgattaagtttgatagaaattacctcgagttattttaccttcaaccctccca 371
Query: 542 cctgtgcatattgttatgaaaagaatcaaagcaagtatttacctataatattaatcatgt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cctgtgcatattgttatgaaaagaatcaaagcaagtatttacctataatattaatcatgt 431
Query: 602 ttactgtacaatataactgtcatttagagacgtttacattacatttctcttaaggattct 661
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 432 ttactgtacaatataactgtcatttagagacgtctacattacatctctcttaaggattct 491
Query: 662 tcacctcactaaatgggggattgaactgaatatattggcacgtgatgtgtaa-taaccta 720
|||||||||||||| || |||||||||||||||||||||||||||||||||| || ||||
Sbjct: 492 tcacctcactaaattggtgattgaactgaatatattggcacgtgatgtgtaattacccta 551
Query: 721 tcgtaagggtttttttgctgcctttctttccagaataaagt-gatgggggattgaaatag 779
||||| | |||||||||||||||||| | || ||||||| ||| || |||||||||||
Sbjct: 552 tcgtagtgttttttttgctgcctttctctacaagataaagtagat-ggtgattgaaatag 610
Query: 780 tattgacattgaagtaat-taacaaactgaaccttt-aaccaaactggaaa 828
|||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 611 tattgacattgaagtaatataacaaactgaacctttaaaccaaactggaaa 661
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8240
Number of Sequences: 1807
Number of extensions: 8240
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)