BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZD03RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1630 1334 0.0
>3x_Contig1630
Length = 14771
Score = 1334 bits (673), Expect = 0.0
Identities = 731/744 (98%), Gaps = 6/744 (0%)
Strand = Plus / Plus
Query: 48 ctagatccgtctacatataaatccactgcgtgggatgcagcaaccaaaattcattacgat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9442 ctagatccgtctacatataaatccactgcgtgggatgcagcaaccaaaattcattacgat 9501
Query: 108 agtaaaatggttaaacaattcgatagctacgaaggtgaattagatgcacgtctgcttaaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9502 agtaaaatggttaaacaattcgatagctacgaaggtgaattagatgcacgtctgcttaaa 9561
Query: 168 aatattacctccaatttctcatctgaaacgttccctattcagaccattctattcgataaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9562 aatattacctccaatttctcatctgaaacgttccctattcagaccattctattcgataaa 9621
Query: 228 gtgctcccgcttctaaactcatcttttaaagcaaacagaaaacttttcacaagacgagtt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9622 gtgctcccgcttctaaactcatcttttaaagcaaacagaaaacttttcacaagacgagtt 9681
Query: 288 ggtgatatattagtaaacgcatcaactggttccggtaagaccttagcatattctgtccct 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9682 ggtgatatattagtaaacgcatcaactggttccggtaagaccttagcatattctgtccct 9741
Query: 348 ttggttcaaattttgagatctagaacagtgaataaagttagggcaataattttggttcct 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9742 ttggttcaaattttgagatctagaacagtgaataaagttagggcaataattttggttcct 9801
Query: 408 actaaaattttaattcatcaagtctacgattgtctctctaaactaagtcaagggaccagt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9802 actaaaattttaattcatcaagtctacgattgtctctctaaactaagtcaagggaccagt 9861
Query: 468 ctcaatgtatcaatgtcgaaactcgagaactccttgaaagaagaacacaacaaatttttg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9862 ctcaatgtatcaatgtcgaaactcgagaactccttgaaagaagaacacaacaaatttttg 9921
Query: 528 tataactctccagacattctaatcatcactccgggcagactggtcgatcacttgcagatg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9922 tataactctccagacattctaatcatcactccgggcagactggtcgatcacttgcagatg 9981
Query: 588 gaatcatttgacctaaaaactttgaagttcttagtccttgatgaagcagaccgactatta 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9982 gaatcatttgacctaaaaactttgaagttcttagtccttgatgaagcagaccgactatta 10041
Query: 648 tatcagtcattccaaaattggaaccaagtgctttttccaccttttgac-aacgattagca 706
|||||||||||||||||||||||||||||| ||||||||| |||||| |||||| ||||
Sbjct: 10042 aatcagtcattccaaaattggaaccaagtgc-ttttccaccatttgacaaacgataagca 10100
Query: 707 ggataaacgtccaggaaacgtaatcaaaatgggtcttttcttgctcttttgactaccaat 766
|||||||||||||||||||||||||||||| ||||||||| |||| ||||||||| |||
Sbjct: 10101 ggataaacgtccaggaaacgtaatcaaaat-ggtcttttc-tgctactttgactacgaat 10158
Query: 767 gcagaaaaaggttgtccaatttgt 790
|||||||| ||||| ||||||||
Sbjct: 10159 gcagaaaa--gttgtacaatttgt 10180
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7255
Number of Sequences: 1807
Number of extensions: 7255
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)