BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZD04FM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1679 1183 0.0
>3x_Contig1679
Length = 11609
Score = 1183 bits (597), Expect = 0.0
Identities = 654/665 (98%), Gaps = 6/665 (0%)
Strand = Plus / Plus
Query: 87 caagggccaaattcatctaagaaaaacgttgacaacactattgttgtatcaacgactcta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8974 caagggccaaattcatctaagaaaaacgttgacaacactattgttgtatcaacgactcta 9033
Query: 147 aaaaacaggtacttcttgcagttctccgacagagaatcattccaaaagtgggtctcagcg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9034 aaaaacaggtacttcttgcagttctccgacagagaatcattccaaaagtgggtctcagcg 9093
Query: 207 ttcaggctttctgcatttgaatttacacttttacaagaggcttatactggtgcattttta 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9094 ttcaggctttctgcatttgaatttacacttttacaagaggcttatactggtgcattttta 9153
Query: 267 tcgactagaggtgccaagttgagtgacattcgtgttattttagctgacactaagttcgat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9154 tcgactagaggtgccaagttgagtgacattcgtgttattttagctgacactaagttcgat 9213
Query: 327 tatgaggactgggtcagcgttagatttggtgcaggtatgccatggaaacgttgttatgca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9214 tatgaggactgggtcagcgttagatttggtgcaggtatgccatggaaacgttgttatgca 9273
Query: 387 gttatctcacaacctaccaagaagaataaagagggaaagaaaaaatatgttggggaaatt 446
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 9274 gttatctcacaacctaccaagaagaataaagagggaaag-aaaaatatgttggggaaatt 9332
Query: 447 aatttctatgaaaatgagaaaaaaacaaagaaaactaaagccatggctaccgtcaccaac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9333 aatttctatgaaaatgagaaaaaaacaaagaaaactaaagccatggctaccgtcaccaac 9392
Query: 507 gcatatgcagtttatgccatttatcctcagtctcctgttctaattgatacatcaactatg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9393 gcatatgcagtttatgccatttatcctcagtctcctgttctaattgatacatcaactatg 9452
Query: 567 atcaaattagaaggcctgatctcgtttggt-agaaagatactcccaaagacacttgata- 624
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 9453 atcaaattagaaggcctgatctcgtttggtaagaaagatactcccaaagacac-tgatat 9511
Query: 625 tttcgtcatgcccgaaaagcattttgctgttccaggttacgatactattattcggtttct 684
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 9512 tttcgtcatgcccgaaaagcattatgctgttccaggttacgatactattattc-gtttct 9570
Query: 685 t-atccccacgatgaatgctttcaatttgtaccggagacctaaaagactaattgcaaata 743
| ||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||
Sbjct: 9571 taatcccaacgatgaatgctttcaatttgtacggtagacctaagagactaattgcaaata 9630
Query: 744 aagac 748
|||||
Sbjct: 9631 aagac 9635
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,190
Number of Sequences: 1807
Number of extensions: 10190
Number of successful extensions: 102
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)