BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZD04RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1041 1158 0.0
>3x_Contig1041
Length = 5356
Score = 1158 bits (584), Expect = 0.0
Identities = 637/648 (98%), Gaps = 5/648 (0%)
Strand = Plus / Minus
Query: 49 gatatcacctttttcgtcc-gcgaaccttcttctatcatatgagtagttaatgatttttt 107
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 4888 gatatcacctttttcgtccagcgaaccttcttctatcatatgagtagttaatgatttttt 4829
Query: 108 aatactatgaaccgagatggcgttggtgattgtttcaaccaacccggtatgggagcttgt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4828 aatactatgaaccgagatggcgttggtgattgtttcaaccaacccggtatgggagcttgt 4769
Query: 168 aatcaaaatattcattttcttgacccatacaccaacattctctttgctccaaatcgccgc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4768 aatcaaaatattcattttcttgacccatacaccaacattctctttgctccaaatcgccgc 4709
Query: 228 cattgcctggatcaactgacatgcaaaagcttcttgtctcaaatcatcaccagattttga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4708 cattgcctggatcaactgacatgcaaaagcttcttgtctcaaatcatcaccagattttga 4649
Query: 288 aataacagaacataagtcccagttgggtaaatgtccgaattcactagatttccttatctt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4648 aataacagaacataagtcccagttgggtaaatgtccgaattcactagatttccttatctt 4589
Query: 348 ttccttcttagcgttccaatcttcacctaaatatgaagtggatgttttatcgtttgaagt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4588 ttccttcttagcgttccaatcttcacctaaatatgaagtggatgttttatcgtttgaagt 4529
Query: 408 ggttaaaccaccggttttgaaatcattttcgagcttacgttctcctgccattccatgaat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4528 ggttaaaccaccggttttgaaatcattttcgagcttacgttctcctgccattccatgaat 4469
Query: 468 agcttcaaggtctcgataaccgaatttatcttgcatctcttgcattgacgcaataatctt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4468 agcttcaaggtctcgataaccgaatttatcttgcatctcttgcattgacgcaataatctt 4409
Query: 528 ggctctgatttgattggcactatcagatagttgttgtggagactggtctagttgtgct-a 586
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 4408 ggctctgatttgattggcactatcagatagttgttgtggagactggtctagttgtgctaa 4349
Query: 587 catcatggcagacactctcatttgagttgctaaatcatcagaaga-tctctatgcagttt 645
||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct: 4348 catcatggcagacactctcatctgagtagctaaatcatcagaagagtctctatgcagttt 4289
Query: 646 gatgtcaatgagccttttcggtcgcttctttgtaaatttgcgacaaaa 693
||||||| |||||| | ||||||||||| ||||| || ||||||||||
Sbjct: 4288 gatgtcagtgagcc-tctcggtcgcttc-ttgtagatctgcgacaaaa 4243
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8500
Number of Sequences: 1807
Number of extensions: 8500
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)