BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZD05FM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1361 1396 0.0
>3x_Contig1361
Length = 8765
Score = 1396 bits (704), Expect = 0.0
Identities = 716/720 (99%)
Strand = Plus / Plus
Query: 84 acgtttcattacggtgactacgaacaattagatatggatcaattaatgtcgaatcaatta 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4389 acgtttcattacggtgactacgaacaattagatatggatcaattaatgtcgaatcaatta 4448
Query: 144 taccatgccaattcatatatttacagaaaggcaataataagaaaacactacttatctcat 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4449 taccatgccaattcatatatttacagaaaggcaataataagaaaacactacttatctcat 4508
Query: 204 acaattcattcatatgtggttaaaaatagagaatcgatcttgaatagggcatttttagaa 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4509 acaattcattcatatgtggttaaaaatagagaatcgatcttgaatagggcatttttagaa 4568
Query: 264 tcatttaacatagatgttgattacgcagagttcttggacgatgcacttgatgaaaactgg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4569 tcatttaacatagatgttgattacgcagagttcttggacgatgcacttgatgaaaactgg 4628
Query: 324 gaattaaggcaagagcttgaatcaaaagagaaatggtggatcttgaagcctagtatgagt 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4629 gaattaaggcaagagcttgaatcaaaagagaaatggtggatcttgaagcctagtatgagt 4688
Query: 384 gataagggtcaaggtatccgcatattcaaaactattgaacaattacaagctatttttgac 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4689 gataagggtcaaggtatccgcatattcaaaactattgaacaattacaagctatttttgac 4748
Query: 444 tcgtttgaagaagatgaaactgatgatgaggacactgagacgaatactaataaagtggcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4749 tcgtttgaagaagatgaaactgatgatgaggacactgagacgaatactaataaagtggcc 4808
Query: 504 acttctcaattacgccatttcatcgtccaagaatacttacacaatcctcttttattgagt 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4809 acttctcaattacgccatttcatcgtccaagaatacttacacaatcctcttttattgagt 4868
Query: 564 gaagcacatggcaggaaatttcatatcagatgttatgttacctgcagtggcgatctacag 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4869 gaagcacatggcaggaaatttcatatcagatgttatgttacctgcagtggcgatctacag 4928
Query: 624 gtgtttgtttatgatagaatgctagcacttttcgctcccaacaaatttgtaccacctacc 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4929 gtgtttgtttatgatagaatgctagcacttttcgctcccaacaaatttgtaccacctacc 4988
Query: 684 gaaaaatatgacgttttagatattgagcaattagcttgtcatttgactaatacttgcttg 743
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4989 gaagaatatgacgttttagatattgagcaattagcttgtcatttgactaatacttgcttg 5048
Query: 744 caaacggatgatgatattaaatcaaattctgggatccagtttgatgctttgaaggatatt 803
||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||
Sbjct: 5049 caaacggatgatgatattaaatcaaattctgtgatcgagtttgatgccttgaaggatatt 5108
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8010
Number of Sequences: 1807
Number of extensions: 8010
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)