BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZD05RM1.SCF screened BAC_end
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1761 1289 0.0
>3x_Contig1761
Length = 23186
Score = 1289 bits (650), Expect = 0.0
Identities = 698/709 (98%), Gaps = 5/709 (0%)
Strand = Plus / Minus
Query: 49 aacatgaactgatgacggacggattttgtaaccagacgcaaacatgttttcttcaattca 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13073 aacatgaactgatgacggacggattttgtaaccagacgcaaacatgttttcttcaattca 13014
Query: 109 tctttgatttcttggctgacatcagagaataccttgtttagagcagagtcaaaagcatct 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13013 tctttgatttcttggctgacatcagagaataccttgtttagagcagagtcaaaagcatct 12954
Query: 169 cttctgaaagagttccattccgaagcgatttctgaggtgttacttgtttcgagagatgtt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12953 cttctgaaagagttccattccgaagcgatttctgaggtgttacttgtttcgagagatgtt 12894
Query: 229 tggaaaagatgattagtatattgatcttgagaagacacatgaatctgaatgttcattaaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12893 tggaaaagatgattagtatattgatcttgagaagacacatgaatctgaatgttcattaaa 12834
Query: 289 tgcaaagattcggcttctaacatccgtaagaagacatctggctctgagcggaaatgggct 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12833 tgcaaagattcggcttctaacatccgtaagaagacatctggctctgagcggaaatgggct 12774
Query: 349 ggagttctaccaagagcatatttgatatcttcgtatggggaacctctttgaatctctttt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12773 ggagttctaccaagagcatatttgatatcttcgtatggggaacctctttgaatctctttt 12714
Query: 409 ctaccttttgaagtcaatgcaacatccacaatatagtacttgtaaaagtcatctctgatc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12713 ctaccttttgaagtcaatgcaacatccacaatatagtacttgtaaaagtcatctctgatc 12654
Query: 469 ttttgccttaccttaggatttttagaaagctctagtgcgtagtatttttcgattgtttct 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12653 ttttgccttaccttaggatttttagaaagctctagtgcgtagtatttttcgattgtttct 12594
Query: 529 aacgccaatttaggattctgggagaaaatctgaagatccttggcctctggtccttctaaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12593 aacgccaatttaggattctgggagaaaatctgaagatccttggcctctggtccttctaaa 12534
Query: 589 atatttgctactgaatcagtaggtttcaatgaagggtgatcaacaaccggatgaagttga 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12533 atatttgctactgaatcagtaggtttcaatgaagggtgatcaacaaccggatgaagttga 12474
Query: 649 tgctcagcactgatatttttaccaacttgttctggcagtaatcccagtttcattgattag 708
||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||| |||
Sbjct: 12473 tgctcagcactgatattttcaccaacttgttct-gcagtaatcccagtatcattga-tag 12416
Query: 709 cttggttttatgccccttggctttgaacttttcataaccttgagttttt 757
|||||| | |||| | |||| ||||||||||||||| |||||||||||
Sbjct: 12415 cttggtataatgcac--tggccttgaacttttcataa-cttgagttttt 12370
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8301
Number of Sequences: 1807
Number of extensions: 8301
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)