BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZD07FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1473 1285 0.0
>3x_Contig1473
Length = 8041
Score = 1285 bits (648), Expect = 0.0
Identities = 711/728 (97%), Gaps = 3/728 (0%)
Strand = Plus / Plus
Query: 89 ctacatcataacccttgtggatcaaccaacgaggggattcaggtaagaagaataaaccaa 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4458 ctacatcataacccttgtggatcaaccaacgaggggattcaggtaagaagaataaaccaa 4517
Query: 149 caaataagatggtagaaaataccaaagaggaacctaacatatatctccaaccacctttga 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4518 caaataagatggtagaaaataccaaagaggaacctaacatatatctccaaccacctttga 4577
Query: 209 catcgaagaaaatgacaccaatgacataaccaaccaactcaccaagggcaatattgaatt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4578 catcgaagaaaatgacaccaatgacataaccaaccaactcaccaagggcaatattgaatt 4637
Query: 269 gatacaacgaaactaaggaaccacgcacggtagatgggacagattcagcaatataaacac 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4638 gatacaacgaaactaaggaaccacgcacggtagatgggacagattcagcaatataaacac 4697
Query: 329 caacaccaccaccttcaataccgacaccaacaccgatcaagaatctgcctgcatacattg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4698 caacaccaccaccttcaataccgacaccaacaccgatcaagaatctgcctgcatacattg 4757
Query: 389 tatgaacatcctgagcagcggcacacaaaataccaccaatggtataaaaaatacatgaga 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4758 tatgaacatcctgagcagcggcacacaaaataccaccaatggtataaaaaatacatgaga 4817
Query: 449 tcactaaggcaacttttctaccgaaatattcacttaatggagttaacaagatagaaccac 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4818 tcactaaggcaacttttctaccgaaatattcacttaatggagttaacaagatagaaccac 4877
Query: 509 cgaccgcacccaaaggcattaaagaggaaatcaaggaatcttcatcggaagtcaatttca 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4878 cgaccgcacccaaaggcattaaagaggaaatcaaggaatcttcatcggaagtcaatttca 4937
Query: 569 acgatgccttcataccataactggcacctgaaatggtcgattgatccacacctgacaaaa 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4938 acgatgccttcataccataactggcacctgaaatggtcgattgatccacacctgacaaaa 4997
Query: 629 tacctgcaaatgatgcgaaaaaaccaagcataataaccatatacgttttatttgagaaag 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4998 tacctgcaaatgatgcgaaaaaaccaagcataataaccatatacgttttatttgagaagt 5057
Query: 689 tcacttcacaaaattccattctttctatacgttgtccttagcgccttagtaactggaata 748
||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||| ||
Sbjct: 5058 tcacttcacaaaattccattcttctcatacgttgt-cttagcgtcttagtaactggagta 5116
Query: 749 tttggcatttcatccttcgtacacctttatttgtggtaaagatttgatctttcctgaaaa 808
|||| ||||||| ||||||||||||| || ||| || ||||||||||||| |||||||
Sbjct: 5117 tttgcaatttcat-cttcgtacaccttaatctgt-gttaagatttgatcttcactgaaaa 5174
Query: 809 aataattg 816
||||||||
Sbjct: 5175 aataattg 5182
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,633
Number of Sequences: 1807
Number of extensions: 13633
Number of successful extensions: 100
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)