BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZD07RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1749 1148 0.0
>3x_Contig1749
Length = 22923
Score = 1148 bits (579), Expect = 0.0
Identities = 586/587 (99%), Gaps = 1/587 (0%)
Strand = Plus / Minus
Query: 41 atgcgttgttaactttattaaagtcagaacatccagaaaggaaacacaaat-caaataag 99
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 587 atgcgttgttaactttattaaagtcagaacatccagaaaggaaacacaaatgcaaataag 528
Query: 100 aagatcaagaaagattcccaacgcgctgaggaagacagtcctgaaaacgatggaattaat 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 aagatcaagaaagattcccaacgcgctgaggaagacagtcctgaaaacgatggaattaat 468
Query: 160 agtgaagatgaacaacaaaatattgaaaatgctttggatgatgtttctggaggagttgtg 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 agtgaagatgaacaacaaaatattgaaaatgctttggatgatgtttctggaggagttgtg 408
Query: 220 gatgaggaagatatggaagattcattatctgacgttgatgagagcgaagatgaatccgat 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gatgaggaagatatggaagattcattatctgacgttgatgagagcgaagatgaatccgat 348
Query: 280 ccattcgaatcacatttcagcaaatatagtgaatcacgcttatatgctttcgataaaggc 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ccattcgaatcacatttcagcaaatatagtgaatcacgcttatatgctttcgataaaggc 288
Query: 340 ttcaaagacaagactgtcaaatacaaatcttcgaaaacagatgtttcggaagaagaatct 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ttcaaagacaagactgtcaaatacaaatcttcgaaaacagatgtttcggaagaagaatct 228
Query: 400 ctaatatattccaaaccgtgtctagatgatgaggaagttttgcctgtgaaggggaaacaa 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ctaatatattccaaaccgtgtctagatgatgaggaagttttgcctgtgaaggggaaacaa 168
Query: 460 actttgagctcatatttcatcaaacagaagttgaaattagcaaacgatttccaaaacaat 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 actttgagctcatatttcatcaaacagaagttgaaattagcaaacgatttccaaaacaat 108
Query: 520 ggcttaccgttaactgaaattcaaaaggaacttgtagatccaatgtttcagtataaagat 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 ggcttaccgttaactgaaattcaaaaggaacttgtagatccaatgtttcagtataaagat 48
Query: 580 atgttatacgaatacgatgattatgctgatgaagatcaatacagaga 626
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 atgttatacgaatacgatgattatgctgatgaagatcaatacagaga 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9434
Number of Sequences: 1807
Number of extensions: 9434
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)