BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZD08FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig304 1201 0.0
>3x_Contig304
Length = 1230
Score = 1201 bits (606), Expect = 0.0
Identities = 663/678 (97%), Gaps = 3/678 (0%)
Strand = Plus / Plus
Query: 87 tcacttctgtgtcgaagaggcatatgaccttaggaatggaaggtttgttgacgatgctaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 tcacttctgtgtcgaagaggcatatgaccttaggaatggaaggtttgttgacgatgctaa 138
Query: 147 ggacaatttcatatttgatgattctcagatattacccttagatgaggtcgtagaacttgt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 ggacaatttcatatttgatgattctcagatattacccttagatgaggtcgtagaacttgt 198
Query: 207 ccaaaacctcattgataaatacttgattccacacaacagagcggaacactcttggaaaag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ccaaaacctcattgataaatacttgattccacacaacagagcggaacactcttggaaaag 258
Query: 267 agcattggttgggcatggtatatcaggggatattagctggctagaatcgttggacataag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agcattggttgggcatggtatatcaggggatattagctggctagaatcgttggacataag 318
Query: 327 attaccgaataatgttcaaaccttggatacccaaaaattattcgagaatatgtacggaag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 attaccgaataatgttcaaaccttggatacccaaaaattattcgagaatatgtacggaag 378
Query: 387 acaatcatcactcaagaggctactgaatttatgcagaataccacactcctaccttcataa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 acaatcatcactcaagaggctactgaatttatgcagaataccacactcctaccttcataa 438
Query: 447 cgcggggaatgattcctactacactctacagttacttttgtcaatgtgcgatataggaac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cgcggggaatgattcctactacactctacagttacttttgtcaatgtgcgatataggaac 498
Query: 507 aagaatcaagttggatttggacaattggcatcatgtaagaagattagaggagaatttata 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aagaatcaagttggatttggacaattggcatcatgtaagaagattagaggagaatttata 558
Query: 567 ttgtgtggagcagctcgaaaaactagggaagcgtaaaagaattcgtggaaacaatttctc 626
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 559 ttgtgtggagcagctcgaaaaacaagggaagcgtaaaagaaatcgtggaaacaatttctc 618
Query: 627 acaacgcttaggaatgcatttttttctacaataattcgcgctgattttacagtatttaaa 686
|||||||| || |||||| ||||||||||||| |||||||||||| ||||||||| || |
Sbjct: 619 acaacgctaagaaatgca-ttttttctacaat-attcgcgctgatattacagtatataga 676
Query: 687 tgtgcatacgttatgctcatatttttattatattttgctgcccggaatcacagtttaacc 746
|||||||||||||||||||||| | ||||||||||||||||||| |||||||||| ||||
Sbjct: 677 tgtgcatacgttatgctcatatatatattatattttgctgcccgtaatcacagttcaacc 736
Query: 747 ttttcttgtttccagcca 764
|||||||| ||||||||
Sbjct: 737 -tttcttgtctccagcca 753
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7604
Number of Sequences: 1807
Number of extensions: 7604
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)