BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZD08RM1.SCF screened BAC_end
(986 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1680 1255 0.0
>3x_Contig1680
Length = 12597
Score = 1255 bits (633), Expect = 0.0
Identities = 707/725 (97%), Gaps = 5/725 (0%)
Strand = Plus / Minus
Query: 52 gcttcagatgtttacgagctagtaacacaggaccaattacatgataacgaacaaatcatt 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11439 gcttcagatgtttacgagctagtaacacaggaccaattacatgataacgaacaaatcatt 11380
Query: 112 tctccagaggaaaagcagttgttgaaatcaacttatttgacatcatttgtactattgaaa 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11379 tctccagaggaaaagcagttgttgaaatcaacttatttgacatcatttgtactattgaaa 11320
Query: 172 ggtgaaacagtcattatgccatatatcaaggacacaatattcgacttcagacaatgttat 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 11319 ggtgaaacagtcattatgccatatatcaaggacacaatattcgacttcagacaatgtgag 11260
Query: 232 gctcgtgttagattacaagatgttacaactgatgaagaagatgccaaaaatgatacggaa 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11259 gctcgtgttagattacaagatgttacaactgatgaagaagatgccaaaaatgatacggaa 11200
Query: 292 actgaagatgaactgacaaaagtcgacttacacagtgatgaattccatgacgaagacttc 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11199 actgaagatgaactgacaaaagtcgacttacacagtgatgaattccatgacgaagacttc 11140
Query: 352 tcgttggaagaacaggaatctgttgctaatatgataccaatgagcacagtcgagtgttcg 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11139 tcgttggaagaacaggaatctgttgctaatatgataccaatgagcacagtcgagtgttcg 11080
Query: 412 ccaccgacacctcagtgcatgaaaccatcggttttaccagtggctataagacatacttct 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11079 ccaccgacacctcagtgcatgaaaccatcggttttaccagtggctataagacatacttct 11020
Query: 472 gatactgaaagacctaatgtggaacgtaccaagtgcaagctgaccccatatagctctttc 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11019 gatactgaaagacctaatgtggaacgtaccaagtgcaagctgaccccatatagctctttc 10960
Query: 532 acaataaagactccaaatgctccgaagaaattagaagcaagtactccagttaaggacatg 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10959 acaataaagactccaaatgctccgaagaaattagaagcaagtactccagttaaggacatg 10900
Query: 592 actacacctagcaaggttaaggtggatgagaacgccgatgaagtccgtcgtcgtaagtta 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10899 actacacctagcaaggttaaggtggatgagaacgccgatgaagtccgtcgtcgtaagtta 10840
Query: 652 aacactcccttgccaaaaaag-aatcccaaaag-aatctagatagcaaattgacagtgat 709
|||||||||| |||||| ||| ||||| ||||| |||| ||| ||||||||||||||||
Sbjct: 10839 aacactccctcgccaaagaagaaatccaaaaagaaatcaagaaagcaaattgacagtga- 10781
Query: 710 tgaaccttcaaaagaacaaacttttttcttttttgactacaagggggggtagattccaaa 769
|||| |||||||||||||||| | |||| | ||||||||||| |||||||||||| ||||
Sbjct: 10780 tgaagcttcaaaagaacaaac-tctttcctctttgactacaa-ggggggtagattacaaa 10723
Query: 770 aaatt 774
||||
Sbjct: 10722 gaatt 10718
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8269
Number of Sequences: 1807
Number of extensions: 8269
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 986
length of database: 10,358,551
effective HSP length: 16
effective length of query: 970
effective length of database: 10,329,639
effective search space: 10019749830
effective search space used: 10019749830
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)