BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZD09FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1332 1287 0.0
>3x_Contig1332
Length = 6394
Score = 1287 bits (649), Expect = 0.0
Identities = 708/721 (98%), Gaps = 5/721 (0%)
Strand = Plus / Minus
Query: 86 cagaaagattaagggcacttcgtggttgataatagtgttcaatatactattaggaaactc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3368 cagaaagattaagggcacttcgtggttgataatagtgttcaatatactattaggaaactc 3309
Query: 146 taagtaagtagtgtacatggtatattaattacaggatataagtaggaagaatttaactta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3308 taagtaagtagtgtacatggtatattaattacaggatataagtaggaagaatttaactta 3249
Query: 206 ttgcattggcattggcattcctcttcctctagcaccttgtggaggagccatactagctcc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3248 ttgcattggcattggcattcctcttcctctagcaccttgtggaggagccatactagctcc 3189
Query: 266 tgcagagtcactctctttattcttaatggtttcatccacggacaaaatcaggttggtagc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3188 tgcagagtcactctctttattcttaatggtttcatccacggacaaaatcaggttggtagc 3129
Query: 326 ttcagtagcactgcttagggcattaatcttgactaaagcaggttcccagacaaatttgtt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3128 ttcagtagcactgcttagggcattaatcttgactaaagcaggttcccagacaaatttgtt 3069
Query: 386 gaaattatcaccgatggtttcattgtcaaaatcaacaccataccacttctcacctttact 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3068 gaaattatcaccgatggtttcattgtcaaaatcaacaccataccacttctcacctttact 3009
Query: 446 gtgagccattcttagtctgttcaagatttccacagagtcgaaacctgcgttttcacttaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3008 gtgagccattcttagtctgttcaagatttccacagagtcgaaacctgcgttttcacttaa 2949
Query: 506 ctgtcttggtataacttctaatgctttggcaaatgcattgataattaattgttgtttacc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2948 ctgtcttggtataacttctaatgctttggcaaatgcattgataattaattgttgtttacc 2889
Query: 566 ggcaatggtctttgaataatctcttagatattttgagatttccatttctatagcaccacc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2888 ggcaatggtctttgaataatctcttagatattttgagatttccatttctatagcaccacc 2829
Query: 626 accacctactactagtttattttgtagagccctttttaacgatcatattagcatcatggt 685
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 2828 accacctactactagtttattttgtagagccc-ttttaacgatcataatagcatcatgta 2770
Query: 686 aggatcttttcaactttagcgataacttgttcagcaccacctctaagtagcaacgtacag 745
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2769 gggatc-tttcaacttcagcgataacttgttcagcaccacctctaagtagcaacgtacag 2711
Query: 746 gttttagcttgggggacatccttttgaaaaggtggtaacgtttcagaaccaaattgcact 805
|||||||||| | |||||||| ||||||||||| |||||| ||||||||||| |||||||
Sbjct: 2710 gttttagctt-gtggacatcc-tttgaaaaggttgtaacg-ttcagaaccaatttgcact 2654
Query: 806 t 806
|
Sbjct: 2653 t 2653
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7179
Number of Sequences: 1807
Number of extensions: 7179
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)