BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZD09RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1784 1199 0.0
>3x_Contig1784
Length = 28126
Score = 1199 bits (605), Expect = 0.0
Identities = 685/704 (97%), Gaps = 6/704 (0%)
Strand = Plus / Minus
Query: 48 ggtaaaatttagcgtgtcttacataattcaactcagtatattctatagtcacaatataaa 107
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 17747 ggtaaaatttagcgtgtcatacataattcaactcagtatattctatagtcacaatataaa 17688
Query: 108 tctatatactagaatgtaatatgttatacttcagctgccacagtggaaatattatggata 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17687 tctatatactagaatgtaatatgttatacttcagctgccacagtggaaatattatggata 17628
Query: 168 tcagaacacttggatgaggtaaattgaaagaatatcagaaattacagaacttgaattcgc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17627 tcagaacacttggatgaggtaaattgaaagaatatcagaaattacagaacttgaattcgc 17568
Query: 228 gaacgggttgaagttcttcgtacttgatgcatcgccatagcgcctcctgttgtctggtag 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17567 gaacgggttgaagttcttcgtacttgatgcatcgccatagcgcctcctgttgtctggtag 17508
Query: 288 aatcagaatatatttcgtatatttttgatagataccaccacactgcagatgtttgataac 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17507 aatcagaatatatttcgtatatttttgatagataccaccacactgcagatgtttgataac 17448
Query: 348 cttctatcgatttatcgactagttcttcgaataagaacttaagtctggctacagcagaag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17447 cttctatcgatttatcgactagttcttcgaataagaacttaagtctggctacagcagaag 17388
Query: 408 aagtttcgagtgacgtggcagaatttctatgtagctccttttggtttattttggagttat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17387 aagtttcgagtgacgtggcagaatttctatgtagctccttttggtttattttggagttat 17328
Query: 468 gcttgagatccgtatccaggtttgcctcttcatcaggaagcacgatttttgccaaaccga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17327 gcttgagatccgtatccaggtttgcctcttcatcaggaagcacgatttttgccaaaccga 17268
Query: 528 tcaatgcctcgacagatgtagagtcatagtgcaaaactttttcgaatttcgctgtcgctt 587
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 17267 tcaatgcctcgacagatgtagagtcatagtgcaaaactttttcgaattccgctgtcgctt 17208
Query: 588 ttttagagtgaccatgtgtatatcacacgaatccttgngcgagggtgttggttcaaat-a 646
||| |||||||||||||||||| ||||||||||||| |||||| ||| ||||||||| |
Sbjct: 17207 tttcagagtgaccatgtgtatacaacacgaatccttgtgcgaggttgt-ggttcaaatta 17149
Query: 647 acatattttgaagtt-ccttctttaacctatctaacgcagcctttacattttcgatttcg 705
||||||||||||||| | ||||| ||| ||||||||||||||||||||||||||| |||
Sbjct: 17148 acatattttgaagttacgttcttaaactcatctaacgcagcctttacattttcgatatcg 17089
Query: 706 ccatttttccaggtattaattccaaatgcaaacaaccaaatctt 749
|| ||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 17088 tca-ttttccaggta-taattcc-aatgcaaacaaccaaatctt 17048
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7615
Number of Sequences: 1807
Number of extensions: 7615
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)