BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZD10FM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1706 561 e-160
3x_Contig515 496 e-140
>3x_Contig1706
Length = 16303
Score = 561 bits (283), Expect = e-160
Identities = 283/283 (100%)
Strand = Plus / Minus
Query: 85 cttctaattacaagaaacccaatgcgcaaaccattgtaaagaacaactgtatagatgatt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 cttctaattacaagaaacccaatgcgcaaaccattgtaaagaacaactgtatagatgatt 238
Query: 145 tccttgattgcgggaagtttgaaatcaattccttttggacattgggtggcatacgtggaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 tccttgattgcgggaagtttgaaatcaattccttttggacattgggtggcatacgtggaa 178
Query: 205 aggaattaattgatttgatggaacttcccaaagaacattctataaagttcattagagatt 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 aggaattaattgatttgatggaacttcccaaagaacattctataaagttcattagagatt 118
Query: 265 catggccagtttcaagcgatgacatcagaaaattcatgctcaagaaaatcatatgcagag 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 catggccagtttcaagcgatgacatcagaaaattcatgctcaagaaaatcatatgcagag 58
Query: 325 atatacaaaggtctagagagtacaacattaatgaagccgatgt 367
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 atatacaaaggtctagagagtacaacattaatgaagccgatgt 15
>3x_Contig515
Length = 1717
Score = 496 bits (250), Expect = e-140
Identities = 295/306 (96%), Gaps = 3/306 (0%)
Strand = Plus / Minus
Query: 452 gatgtcgaagaaaaatttgagaaatgatgattgtgctagcgttattgactgcattgaatg 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1717 gatgtcgaagaaaaatttgagaaatgatgattgtgctagcgttattgactgcattgaatg 1658
Query: 512 gcttgaaatcttttgcagtgaactaaactaccgtgtacatgacttagaacaagaatatga 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1657 gcttgaaatcttttgcagtgaactaaactaccgtgtacatgacttagaacaagaatatga 1598
Query: 572 aaaggtaataatgccaagaacaattgttattatgattaagggcaaagcaggcatgaaata 631
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1597 aaaggtaataatgccaagaacaattgttatcatgattaagggcaaagcaggcatgaaata 1538
Query: 632 tactcaaacccgaag-attactaccgcttcaagtagtttaacgtccagagagtttttcat 690
||||||||||||||| || |||||||||||||||||| |||||||||||||||| |||||
Sbjct: 1537 tactcaaacccgaagaatcactaccgcttcaagtagtataacgtccagagagttattcat 1478
Query: 691 tattgccacaaaattgataaacgagattgataagcaacatgggaaggcttgcccggtgtt 750
| ||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 1477 caatgcaacaaaattgataaacgagattgataagcaacatggcaa-gcttg-ccggtgtt 1420
Query: 751 taccct 756
||||||
Sbjct: 1419 taccct 1414
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7728
Number of Sequences: 1807
Number of extensions: 7728
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 2
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)