BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZD10RM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1657 1340 0.0
>3x_Contig1657
Length = 14558
Score = 1340 bits (676), Expect = 0.0
Identities = 749/768 (97%), Gaps = 4/768 (0%)
Strand = Plus / Minus
Query: 45 cttgactctctacagtcctttgtgaacacagtacagcagtcgttgaagacgctctctcat 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13307 cttgactctctacagtcctttgtgaacacagtacagcagtcgttgaagacgctctctcat 13248
Query: 105 gaaaacggagaatatttgtacattttgagaagtaaagctaatctagagttccaagcacgt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13247 gaaaacggagaatatttgtacattttgagaagtaaagctaatctagagttccaagcacgt 13188
Query: 165 gaggctttagagcgacagcaaagagagaaggagaaggcagagtccgcttcgatgaaagca 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13187 gaggctttagagcgacagcaaagagagaaggagaaggcagagtccgcttcgatgaaagca 13128
Query: 225 tcaactgaattcgaactctcttcctcttccttttcctcttcctctccctccactgcatct 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13127 tcaactgaattcgaactctcttcctcttccttttcctcttcctctccctccactgcatct 13068
Query: 285 tcatgcactgcatcaagtacctctactgcttccttactcgctgtggaaaaaactatcgca 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13067 tcatgcactgcatcaagtacctctactgcttccttactcgctgtggaaaaaactatcgca 13008
Query: 345 ctagaagacctgcaatcctattatcaaaatgtatcaagtacagattctctgtaacgcact 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13007 ctagaagacctgcaatcctattatcaaaatgtatcaagtacagattctctgtaacgcact 12948
Query: 405 gtaacatttcccagcatcatctaatgctgtacgtgcagcgtatataataatatagtataa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12947 gtaacatttcccagcatcatctaatgctgtacgtgcagcgtatataataatatagtataa 12888
Query: 465 tatgtagtttaatgacataactcaactgttaccctccttcggtctgtgcatgtgcaaaat 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12887 tatgtagtttaatgacataactcaactgttaccctccttcggtctgtgcatgtgcaaaat 12828
Query: 525 taaaattaatccgctgtccaaactaaacgagcacatgtccagaaaaggaattttcaacga 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12827 taaaattaatccgctgtccaaactaaacgagcacatgtccagaaaaggaattttcaacga 12768
Query: 585 ctaaaaatcaagtttctccagtaaagtaagaaagacttgccactcagagctcatcgttca 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12767 ctaaaaatcaagtttctccagtaaagtaagaaagacttgccactcagagctcatcgttca 12708
Query: 645 aaggacaccaaactgttcatatc-aggcatcgccttgtgaaaaaaaaagtataaaaaaaa 703
||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 12707 aaggacaccaaactgttcaaatcaaggcatcgccttgtgaaaaaaaaagtaaaaaaaaaa 12648
Query: 704 aaaaactggataaaactggaaacaacgaaaaagtttcatactaccgagtttttaaatagg 763
|||||||||||||||||| ||| |||| ||||| |||| ||||||||| | |||| |||
Sbjct: 12647 aaaaactggataaaactgaaaaaaacg-aaaaggttcaatctaccgagtatataaa-agg 12590
Query: 764 aacagaaccccattgtgcaattacctttggattgggattttcatagat 811
||||||| | |||| ||||||| | |||||||||||| |||||||||
Sbjct: 12589 aacagaaacacatttggcaatta-cgttggattgggatattcatagat 12543
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,457
Number of Sequences: 1807
Number of extensions: 15457
Number of successful extensions: 302
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)