BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZD11FM1.SCF screened BAC_end
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1394 1277 0.0
>3x_Contig1394
Length = 5721
Score = 1277 bits (644), Expect = 0.0
Identities = 719/735 (97%), Gaps = 8/735 (1%)
Strand = Plus / Minus
Query: 87 atcgacattctactctaagcatagtcccttacgaataccgtaaaagataatctaattcat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4912 atcgacattctactctaagcatagtcccttacgaataccgtaaaagataatctaattcat 4853
Query: 147 agagagcacaaaaacatatcaatatgagtgagacaaaatatgctttggtcactggtgcat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4852 agagagcacaaaaacatatcaatatgagtgagacaaaatatgctttggtcactggtgcat 4793
Query: 207 catcagggattggttatgaagtcacaaaggagttattgaggagagggtggtacgtgtacg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4792 catcagggattggttatgaagtcacaaaggagttattgaggagagggtggtacgtgtacg 4733
Query: 267 catgtgccagaagaacacatcctatggaggaattaagagccgagtttggagatagatgca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4732 catgtgccagaagaacacatcctatggaggaattaagagccgagtttggagatagatgca 4673
Query: 327 tccctaggaaacttgatgtttcgaatcagaatgatatcacccagttgaagttgaagttgg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4672 tccctaggaaacttgatgtttcgaatcagaatgatatcacccagttgaagttgaagttgg 4613
Query: 387 agcaagaattaccagatcagaagctacatctattatataataacgctggccaaagctgct 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4612 agcaagaattaccagatcagaagctacatctattatataataacgctggccaaagctgct 4553
Query: 447 ctctgcccgcaatagacgtgagcgaagaaatcatcgataatacattcagagtaaacgttt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4552 ctctgcccgcaatagacgtgagcgaagaaatcatcgataatacattcagagtaaacgttt 4493
Query: 507 atggacccatcaactcatgtcgtgaattcgcaccattaatcataaacgctaaggggacaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4492 atggacccatcaactcatgtcgtgaattcgcaccattaatcataaacgctaaggggacaa 4433
Query: 567 tcgtcttcactgggtcattagctgggatatgtccattttcgtttggagcagtgtacagcg 626
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 4432 tcgtcttcactgggtcattagctgggatatgtccatttccgtttggagcagtgtacagcg 4373
Query: 627 catcaaaggctgcgattcatcaatacgctcgggtgttacacggagaattaggtcctttgg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4372 catcaaaggctgcgattcatcaatacgctcgggtgttacacggagaattaggtcctttgg 4313
Query: 687 gcgtacgtgtcattaacatgattacagggaggtgttgccacagaacattgttgat-agaa 745
|||||||||||||||||||||||||| |||||||| ||||||| |||| | |||| ||||
Sbjct: 4312 gcgtacgtgtcattaacatgattaca-ggaggtgtagccacag-acatcgctgataagaa 4255
Query: 746 gacattacccagaa-gtagtatttttaaacttcccggagggttttaaagccgcgttgaaa 804
||||||| |||||| |||||| | || ||||||||||||||| | ||||| ||||||||
Sbjct: 4254 gacatta-ccagaaggtagta-tcttcaacttcccggagggtatcaaagc--cgttgaaa 4199
Query: 805 cccgtaagaagatgt 819
|||||||||||||||
Sbjct: 4198 cccgtaagaagatgt 4184
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5306
Number of Sequences: 1807
Number of extensions: 5306
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)