BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZD11RM1.SCF screened BAC_end
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1320 1047 0.0
>3x_Contig1320
Length = 7350
Score = 1047 bits (528), Expect = 0.0
Identities = 593/607 (97%), Gaps = 7/607 (1%)
Strand = Plus / Minus
Query: 45 gcttggcgaccatgaacaactttgttcagttatccgtatgtttgtttttttcttttatgt 104
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2592 gcttggcgaccatgaacaactttgctcagttatccgtatgtttgtttttttcttttatgt 2533
Query: 105 tttggcgtaagttttgatcacacgttaaacatttttgtttaagggtttaagacaatgaaa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2532 tttggcgtaagttttgatcacacgttaaacatttttgtttaagggtttaagacaatgaaa 2473
Query: 165 taatataattcattgtatgttattttaagttggcatattcagcatactaacagtttttat 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2472 taatataattcattgtatgttattttaagttggcatattcagcatactaacagttttcat 2413
Query: 225 cttgaaatggaatcttctctctttagcaaatctccagttttgcgcagaacttgtctgtgg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2412 cttgaaatggaatcttctctctttagcaaatctccagttttgcgcagaacttgtctgtgg 2353
Query: 285 aacgcattaagagcgaatttggttctctacaaaatagattggcgtcggtacgtccaccac 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2352 aacgcattaagagcgaatttggttctctacaaaatagattggcgtcggtacgtccaccac 2293
Query: 345 aggaattcttcgacttcaagagaatttccaaacctcaaaattttggtgaagttcaatcga 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2292 aggaattcttcgacttcaagagaatttccaaacctcaaaattttggtgaagttcaatcga 2233
Query: 405 gagtgggctacaacttgggctatttttcaaccaactatgtcctgattattagtgctctaa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2232 gagtgggctacaacttgggctatttttcaaccaactatgtcctgattattagtgctctaa 2173
Query: 465 gtatttacacgttgttaaccaactttttgttgttgacggtgattgttttcgtggtctttg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2172 gtatttacacgttgttaaccaactttttgttgttgacggtgattgttttcgtggtctttg 2113
Query: 525 ggactatgggtattaacaagctaaacggtgcggatttgggtcactccattttggttcttt 584
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 2112 ggactatgggtattaacaagctaaacggtgcggattt-ggtcactcca-tttggttcttt 2055
Query: 585 ttagactttttaacctttacactggtctaccttatgtgttgctggtccctttgggggttc 644
| |||| || | | |||||||||||||||| ||||||||||| || ||||| |||||||
Sbjct: 2054 taagac-ttctcagctttacactggtctac--tatgtgttgct-gtaccttt-ggggttc 2000
Query: 645 ctagctt 651
|||||||
Sbjct: 1999 ctagctt 1993
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,807
Number of Sequences: 1807
Number of extensions: 15807
Number of successful extensions: 111
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)