BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC27ZD12FM1.SCF screened BAC_end
         (1051 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1326                                                         466   e-131

>3x_Contig1326 
          Length = 4875

 Score =  466 bits (235), Expect = e-131
 Identities = 291/306 (95%), Gaps = 4/306 (1%)
 Strand = Plus / Plus

                                                                       
Query: 110 tattccttgtattggttggcttcacccttgtcagccataatcaaagccatgtagatgtaa 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tattccttgtattggttggcttcacccttgtcagccataatcaaagccatgtagatgtaa 259

                                                                       
Query: 170 gtagaaggtcttgggttttaagacaacgattcttccaggttaatatgcgcggtaattgga 229
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtagaaggtcttgggttcaaagacaacgattcttccaggttaatatgcgcggtaattgga 319

                                                                       
Query: 230 tc--tcttgagttaacttgaaaatacccacatgttcgaaggcgatggcagccttcttctt 287
           ||  | ||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcatttttgaag-aacttgaaaatacccacatgttcgaaggcgatggcagccttcttctt 378

                                                                       
Query: 288 caaagattcattatctggagaagattctaattctttcttgcataactcggcagccttggt 347
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 379 caaagattcattatctggagaagattctaattctttcttgtataactcggcagccttggt 438

                                                                       
Query: 348 gaatttcttcatcagccaattcgtaacatccggtttgacattaggacagtttttccatac 407
           ||| |||||||||||||||||||||||||||||||||||||| | |||  ||||||| ||
Sbjct: 439 gaa-ttcttcatcagccaattcgtaacatccggtttgacatttgtacaagttttccaaac 497

                 
Query: 408 cttttt 413
           ||||||
Sbjct: 498 cttttt 503


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,817
Number of Sequences: 1807
Number of extensions: 20817
Number of successful extensions: 450
Number of sequences better than 1.0e-20: 1
length of query: 1051
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1035
effective length of database: 10,329,639
effective search space: 10691176365
effective search space used: 10691176365
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)