BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC27ZD12FM1.SCF screened BAC_end (1051 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1326 466 e-131 >3x_Contig1326 Length = 4875 Score = 466 bits (235), Expect = e-131 Identities = 291/306 (95%), Gaps = 4/306 (1%) Strand = Plus / Plus Query: 110 tattccttgtattggttggcttcacccttgtcagccataatcaaagccatgtagatgtaa 169 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 200 tattccttgtattggttggcttcacccttgtcagccataatcaaagccatgtagatgtaa 259 Query: 170 gtagaaggtcttgggttttaagacaacgattcttccaggttaatatgcgcggtaattgga 229 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 260 gtagaaggtcttgggttcaaagacaacgattcttccaggttaatatgcgcggtaattgga 319 Query: 230 tc--tcttgagttaacttgaaaatacccacatgttcgaaggcgatggcagccttcttctt 287 || | |||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 320 tcatttttgaag-aacttgaaaatacccacatgttcgaaggcgatggcagccttcttctt 378 Query: 288 caaagattcattatctggagaagattctaattctttcttgcataactcggcagccttggt 347 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 379 caaagattcattatctggagaagattctaattctttcttgtataactcggcagccttggt 438 Query: 348 gaatttcttcatcagccaattcgtaacatccggtttgacattaggacagtttttccatac 407 ||| |||||||||||||||||||||||||||||||||||||| | ||| ||||||| || Sbjct: 439 gaa-ttcttcatcagccaattcgtaacatccggtttgacatttgtacaagttttccaaac 497 Query: 408 cttttt 413 |||||| Sbjct: 498 cttttt 503 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 20,817 Number of Sequences: 1807 Number of extensions: 20817 Number of successful extensions: 450 Number of sequences better than 1.0e-20: 1 length of query: 1051 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1035 effective length of database: 10,329,639 effective search space: 10691176365 effective search space used: 10691176365 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)