BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC27ZD12RM1.SCF screened BAC_end
         (930 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig640                                                         1203   0.0  

>3x_Contig640 
          Length = 3164

 Score = 1203 bits (607), Expect = 0.0
 Identities = 702/730 (96%), Gaps = 3/730 (0%)
 Strand = Plus / Minus

                                                                        
Query: 42   gcttgaaca-caacacctctacctttagtatccacagagtctaaaagaccagtcaaatct 100
            ||||||||| |||||||||||||   ||||||||||||||||||||||||||||||||||
Sbjct: 1127 gcttgaacaacaacacctctaccagaagtatccacagagtctaaaagaccagtcaaatct 1068

                                                                        
Query: 101  tccatgacgtcatccatcatttcttcttcatcatcgtctggacctacaactaataatcgg 160
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 tccatgacgtcatccatcatttcttcttcatcatcgtctggacctacaactaataatcgg 1008

                                                                        
Query: 161  gaaccatatacagccttttccaaatcatttgcagcaatttttacacctagagcagtcntg 220
            |||||| | |||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 1007 gaaccagaaacagccttttccaaatcatttgcagcaatttttacacctagagcagccttg 948

                                                                        
Query: 221  acttctttgtgatgttgatattcagacttcaaacgtaactcacgtaagggttgaggtgtc 280
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947  acttctttgtgatgttgatattcagacttcaaacgtaactcacgtaagggttgaggtgtc 888

                                                                        
Query: 281  aacaaggctctgatattcgtcacaatcggaccgttcataccacataaaacgattctgtca 340
            ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 887  aacaaggctctgatattcgtcacaatcggaccgttcataccacataaaaagattctgtaa 828

                                                                        
Query: 341  ccctctcttaagtaaccattagatagaataacatcgatagtggtaccgaaaccttcaaca 400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827  ccctctcttaagtaaccattagatagaataacatcgatagtggtaccgaaaccttcaaca 768

                                                                        
Query: 401  accttcacttcaagaattgtagcttcaacgtgagacaaatatttcaattgcttagacatt 460
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767  accttcacttcaagaattgtagcttcaacgtgagacaaatatttcaattgcttagacatt 708

                                                                        
Query: 461  ctcttttgagtcaattctaatagcaaccacaacaaatcaggaacaccttcacctgtaacg 520
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707  ctcttttgagtcaattctaatagcaaccacaacaaatcaggaacaccttcacctgtaacg 648

                                                                        
Query: 521  gcagatgttggaacaatagagacgtatttggctaggttgttgttttggaaatacaattct 580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647  gcagatgttggaacaatagagacgtatttggctaggttgttgttttggaaatacaattct 588

                                                                        
Query: 581  gagttcaaaccttgttcagcaagagcgacttttgatgttgtcaagtctagtttggaactc 640
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 587  gagttcaaaccttgttcagcaagagcgac-tttgatgttgtcaagtctagtttggaactc 529

                                                                        
Query: 641  tggcttaactgctcgttcttgtttggcaaaagagtctcttgaagagttgtttggtgttat 700
            | ||||||||||||||||||||||| |||| ||||||||  |||||||||||||||| ||
Sbjct: 528  ttgcttaactgctcgttcttgtttgtcaaaggagtctctgaaagagttgtttggtgtaat 469

                                                                        
Query: 701  taccccagcggtccaatttttggatctttttcagggcaacgatgaaaggagcctttctgg 760
            || |||||  || |||| | | |||||| |||| ||||||||||||||||||||||||| 
Sbjct: 468  ta-cccagtcgtacaatctatcgatcttattcaaggcaacgatgaaaggagcctttctgt 410

                      
Query: 761  ctttcaataa 770
            || |||||||
Sbjct: 409  ctctcaataa 400


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7358
Number of Sequences: 1807
Number of extensions: 7358
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)