BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC27ZD12RM1.SCF screened BAC_end (930 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig640 1203 0.0 >3x_Contig640 Length = 3164 Score = 1203 bits (607), Expect = 0.0 Identities = 702/730 (96%), Gaps = 3/730 (0%) Strand = Plus / Minus Query: 42 gcttgaaca-caacacctctacctttagtatccacagagtctaaaagaccagtcaaatct 100 ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 1127 gcttgaacaacaacacctctaccagaagtatccacagagtctaaaagaccagtcaaatct 1068 Query: 101 tccatgacgtcatccatcatttcttcttcatcatcgtctggacctacaactaataatcgg 160 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1067 tccatgacgtcatccatcatttcttcttcatcatcgtctggacctacaactaataatcgg 1008 Query: 161 gaaccatatacagccttttccaaatcatttgcagcaatttttacacctagagcagtcntg 220 |||||| | |||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct: 1007 gaaccagaaacagccttttccaaatcatttgcagcaatttttacacctagagcagccttg 948 Query: 221 acttctttgtgatgttgatattcagacttcaaacgtaactcacgtaagggttgaggtgtc 280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 947 acttctttgtgatgttgatattcagacttcaaacgtaactcacgtaagggttgaggtgtc 888 Query: 281 aacaaggctctgatattcgtcacaatcggaccgttcataccacataaaacgattctgtca 340 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 887 aacaaggctctgatattcgtcacaatcggaccgttcataccacataaaaagattctgtaa 828 Query: 341 ccctctcttaagtaaccattagatagaataacatcgatagtggtaccgaaaccttcaaca 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 827 ccctctcttaagtaaccattagatagaataacatcgatagtggtaccgaaaccttcaaca 768 Query: 401 accttcacttcaagaattgtagcttcaacgtgagacaaatatttcaattgcttagacatt 460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 767 accttcacttcaagaattgtagcttcaacgtgagacaaatatttcaattgcttagacatt 708 Query: 461 ctcttttgagtcaattctaatagcaaccacaacaaatcaggaacaccttcacctgtaacg 520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 707 ctcttttgagtcaattctaatagcaaccacaacaaatcaggaacaccttcacctgtaacg 648 Query: 521 gcagatgttggaacaatagagacgtatttggctaggttgttgttttggaaatacaattct 580 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 647 gcagatgttggaacaatagagacgtatttggctaggttgttgttttggaaatacaattct 588 Query: 581 gagttcaaaccttgttcagcaagagcgacttttgatgttgtcaagtctagtttggaactc 640 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 587 gagttcaaaccttgttcagcaagagcgac-tttgatgttgtcaagtctagtttggaactc 529 Query: 641 tggcttaactgctcgttcttgtttggcaaaagagtctcttgaagagttgtttggtgttat 700 | ||||||||||||||||||||||| |||| |||||||| |||||||||||||||| || Sbjct: 528 ttgcttaactgctcgttcttgtttgtcaaaggagtctctgaaagagttgtttggtgtaat 469 Query: 701 taccccagcggtccaatttttggatctttttcagggcaacgatgaaaggagcctttctgg 760 || ||||| || |||| | | |||||| |||| ||||||||||||||||||||||||| Sbjct: 468 ta-cccagtcgtacaatctatcgatcttattcaaggcaacgatgaaaggagcctttctgt 410 Query: 761 ctttcaataa 770 || ||||||| Sbjct: 409 ctctcaataa 400 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7358 Number of Sequences: 1807 Number of extensions: 7358 Number of successful extensions: 61 Number of sequences better than 1.0e-20: 1 length of query: 930 length of database: 10,358,551 effective HSP length: 16 effective length of query: 914 effective length of database: 10,329,639 effective search space: 9441290046 effective search space used: 9441290046 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)