BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZE01FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1557 864 0.0
>3x_Contig1557
Length = 10562
Score = 864 bits (436), Expect = 0.0
Identities = 470/480 (97%), Gaps = 1/480 (0%)
Strand = Plus / Plus
Query: 84 tacttgaacaattaggagaccgtgaaacagatcttttcaaaaagaaatacattcaggaag 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tacttgaacaattaggagaccgtgaaacagatcttttcaaaaagaaatacattcaggaag 533
Query: 144 ttcgtaagcaagaggctcatgataggcgaaagaaattgaaaagtaaccccaatgtttccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ttcgtaagcaagaggctcatgataggcgaaagaaattgaaaagtaaccccaatgtttccc 593
Query: 204 agggcaaggtcgacatatattttatgattccgttggagaatatgccggtctatgatgttg 263
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 agggcaaggtcgacagaaattttatgattccgttggagaatatgccggtctatgatgttg 653
Query: 264 atggcaacgccgctgaaggctctttgaatttgtctaataaggatttcgctaatatgcgta 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 atggcaacgccgctgaaggctctttgaatttgtctaataaggatttcgctaatatgcgta 713
Query: 324 aagaaattaatttggcgaatgaaggtgatggcgaagcagctaaagctttgaaactaaaaa 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 aagaaattaatttggcgaatgaaggtgatggcgaagcagctaaagctttgaaactaaaaa 773
Query: 384 gtgagaagaatagcggtgtggtcgagttttcatcggaagaattgaaaaatagcgtgcaac 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 gtgagaagaatagcggtgtggtcgagttttcatcggaagaattgaaaaatagcgtgcaac 833
Query: 444 tgtcgaagactgcgaactacgatgctgctaccagcttacaggagaaacttattgtttaga 503
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 834 tgtcgaagactgcgaactacgatgctgctaccagcttacaggagaaacttattgctaaga 893
Query: 504 agatggcaatgagagatgaggaaaatgcccaataatttgtctttgaaacggaaaaatgaa 563
|||||||||||||||||||||||||||| || || ||||| ||||||||||||| ||||
Sbjct: 894 agatggcaatgagagatgaggaaaatgcagaagaa-ttgtcgttgaaacggaaaagtgaa 952
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,964
Number of Sequences: 1807
Number of extensions: 14964
Number of successful extensions: 463
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)