BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZE02FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig675 1287 0.0
>3x_Contig675
Length = 2979
Score = 1287 bits (649), Expect = 0.0
Identities = 731/747 (97%), Gaps = 10/747 (1%)
Strand = Plus / Minus
Query: 90 caacaatgtattaaggttagcctttgtagtatttcgggcttcagcaaacgcttttttcat 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1668 caacaatgtattaaggttagcctttgtagtatttcgggcttcagcaaacgcttttttcat 1609
Query: 150 cagaaatgaatcaggatccatcatcataggtaaatgtttagccatgtagaaaatcacatc 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1608 cagaaatgaatcaggatccatcatcataggtaaatgtttagccatgtagaaaatcacatc 1549
Query: 210 aataccttttctttttcgaggaaaatgcagtcgtttctttttaatcaagatcagagttgt 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1548 aataccttttctttttcgaggaaaatgcagtcgtttctttttaatcaagatcagagttgt 1489
Query: 270 tccgggcggagaaacttgccaaggtgacgtacgtacctcaatatttctttcggagaaaca 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1488 tccgggcggagaaacttgccaaggtgacgtacgtacctcaatatttctttcggagaaaca 1429
Query: 330 acaagatcagaatgatcacgtgaccaattgaccaaaagatgtggctcattcataggaata 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1428 acaagatcagaatgatcacgtgaccaattgaccaaaagatgtggctcattcataggaata 1369
Query: 390 aaaaccgtacgctctacactgtacactaccacgcgtcttcgctcactccatggtatacaa 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1368 aaaaccgtacgctctacactgtacactaccacgcgtcttcgctcactccatggtatacaa 1309
Query: 450 gggtgttgctgtcataccgtctcggctgttatgcgaaggtaacgaaatattttttttttt 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1308 gggtgttgctgtcataccgtctcggctgttatgcgaaggtaacgaaatattttttttttt 1249
Query: 510 tctttcgaaaaaaacgtcgactcaagccatcatcacaaactcgtcccagaagcaacgtac 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1248 tctttcgaaaaaaacgtcgactcaagccatcatcacaaactcgtcccagaagcaacgtac 1189
Query: 570 gactcgcatatttgctgaatctggcaaatcgcataccgtaatatcattagaattagcccc 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1188 gactcgcatatttgctgaatctggcaaatcgcataccgtaatatcattagaattagcccc 1129
Query: 630 aaggcaattcttaagcactcgagggaaaaaaaaaagatagaaacgaacattcacacacag 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1128 aaggcaattcttaagcactcgagggaaaaaaaaaagatagaaacgaacattcacacacag 1069
Query: 690 aaacttacagctgagagaaagaaaggaaacagttgaaaataaagacaaagcaatgatgga 749
||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||
Sbjct: 1068 aaacttacagctgagagaaagaaaggaaacagtagaaaa-aaagaaaaagcaatgat-ga 1011
Query: 750 ggtaagccctgattaacattggtgggtggcgagccgccaatgctttggcatacttttacc 809
||||| ||||||||||| |||||| ||||| |||||||||||| |||||| ||||||
Sbjct: 1010 agtaag-cctgattaaca-tggtgg--tgcgag-cgccaatgcttt-gcatac-tttacc 958
Query: 810 tgnctttgtttccactgaaaatccaac 836
|| || || ||||||||||||||||||
Sbjct: 957 tgcctctg-ttccactgaaaatccaac 932
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,980
Number of Sequences: 1807
Number of extensions: 19980
Number of successful extensions: 204
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)