BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZE03FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1337 1211 0.0
>3x_Contig1337
Length = 7771
Score = 1211 bits (611), Expect = 0.0
Identities = 662/674 (98%), Gaps = 4/674 (0%)
Strand = Plus / Plus
Query: 87 tacgttttattcacttttttataagcacttcttcgcagttttctgtatttagtttttaga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3233 tacgttttattcacttttttataagcacttcttcgcagttttctgtatttagtttttaga 3292
Query: 147 gaaacaatattggaacaagtgtcagacacattgcttgagctgttggttggtttttgtttg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3293 gaaacaatattggaacaagtgtcagacacattgcttgagctgttggttggtttttgtttg 3352
Query: 207 cactcgcagtatttatttgaattctcatagacgtttttcaaagaaaataaagttgaggtg 266
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3353 cactcgcagtatctatttgaattctcatagacgtttttcaaagaaaataaagttgaggtg 3412
Query: 267 attttttgagaagtgaaaccaagggaacaaacctggaataagtggggaacaaaacacaag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3413 attttttgagaagtgaaaccaagggaacaaacctggaataagtggggaacaaaacacaag 3472
Query: 327 aacggttttatttgtagatattggtttatcagcagtactgctctgctatacaattttaac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3473 aacggttttatttgtagatattggtttatcagcagtactgctctgctatacaattttaac 3532
Query: 387 tatttggtaaaaataagaccagaataacaatatattataacatattcagaaactagaact 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3533 tatttggtaaaaataagaccagaataacaatatattataacatattcagaaactagaact 3592
Query: 447 acatgtccgtggttgcaattaaaaacgctgtgtcaaaactcgtagcgaaaaatcaggaag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3593 acatgtccgtggttgcaattaaaaacgctgtgtcaaaactcgtagcgaaaaatcaggaag 3652
Query: 507 ttccattactatcatccgatagttctaattccaattcgaattctaccactaatttgaata 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3653 ttccattactatcatccgatagttctaattccaattcgaattctaccactaatttgaata 3712
Query: 567 gtcatcgatactcggcttcaccacaggatggcgatatagaattctcanagcatacaggtg 626
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 3713 gtcatcgatactcggcttcaccacaggatggcgatatagaatcctcaaagcatacaggtg 3772
Query: 627 ggtttgacgattatgac-atgaggatgatggtacgtctggattgttcggtaagattgatc 685
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3773 ggtttgacgattatgacaatgaggatgatggtacgtctggattgttcggtaagattgatc 3832
Query: 686 caagnatttatgttcgatttgattattggactcagtgattgttttgacgggttcctttcg 745
|||| | |||||| |||| ||||||| ||||||||||| || |||||| |||||||||||
Sbjct: 3833 caag-agttatgtccgatatgattatcggactcagtga-tggtttgac-ggttcctttcg 3889
Query: 746 cgttgaccgcaggt 759
||||||||||||||
Sbjct: 3890 cgttgaccgcaggt 3903
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7384
Number of Sequences: 1807
Number of extensions: 7384
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)