BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZE03RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig348 846 0.0
3x_Contig435 194 2e-49
>3x_Contig348
Length = 1001
Score = 846 bits (427), Expect = 0.0
Identities = 513/531 (96%), Gaps = 8/531 (1%)
Strand = Plus / Plus
Query: 207 gttctaaaggtcctcagttcttgaaattcgacagagttttatgtgacgttccatgttctg 266
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 gttctaaaggtc-tcagttcttgaaattcgacagagttttatgtgacgttccatgttctg 64
Query: 267 gtgacggtactatgagaaag-aacgtcaacgtttggaaggattggaacactggatctggt 325
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 65 gtgacggtagtatgagaaagcaacgtcaacgtttggaaggattggaacactggatctggt 124
Query: 326 ctaggtttacacattgtgcaattgaatatcttggaaagaggtctaaatttgttgaaagaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ctaggtttacacattgtgcaattgaatatcttggaaagaggtctaaatttgttgaaagaa 184
Query: 386 ggtggtaaacttgtatactccacttgttctttgaatccaattgaaaacgaagcagttatt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtggtaaacttgtatactccacttgttctttgaatccaattgaaaacgaagcagttatt 244
Query: 446 gctgccgctttgagaaggtggggtgataaggtaagattggtcaactgtgatgatcaattg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gctgccgctttgagaaggtggggtgataaggtaagattggtcaactgtgatgatcaattg 304
Query: 506 ccaggtttagtcagatctaagggtatcactgaatggaaggtatacgacaaacaattccaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccaggtttagtcagatctaagggtatcactgaatggaaggtatacgacaaacaattccaa 364
Query: 566 gttagagaaaaaggacatgaaaactgtttggattcatggtt-ccaccaactgcagaagaa 624
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 365 gttagagaaaaaggacatgaaaactgtttggattcatggttcccaccaactgcagaagag 424
Query: 625 gttg-aaaatttcatttgg-aaactgtttgagagtgttcc-acatcaacag-atacaggt 680
|||| |||||| ||||||| ||||||| ||||||||| || |||||||||| ||||||||
Sbjct: 425 gttgaaaaattccatttggaaaactgtatgagagtgtaccaacatcaacagaatacaggt 484
Query: 681 gggttctttat-accgttttcgagaagattcatccttaaactgctgaaact 730
||||||||||| ||||||||||||||||| || | | |||||||||||||
Sbjct: 485 gggttctttatcaccgttttcgagaagatcgatacatcaactgctgaaact 535
>3x_Contig435
Length = 1599
Score = 194 bits (98), Expect = 2e-49
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 35 gctttacatgccgaatctgatgaaccttctgggtttgtcatagctaacgatgcagactat 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 gctttacatgccgaatctgatgaaccttctgggtttgtcatagctaacgatgcagactat 39
Query: 95 aagagatctcatatgttggtgcaccaattgaaacgttt 132
||||||||||||||||||||||||||||||||||||||
Sbjct: 38 aagagatctcatatgttggtgcaccaattgaaacgttt 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7921
Number of Sequences: 1807
Number of extensions: 7921
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 2
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)