BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZE04FM1.SCF screened BAC_end
(812 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1434 222 9e-58
>3x_Contig1434
Length = 8845
Score = 222 bits (112), Expect = 9e-58
Identities = 133/136 (97%), Gaps = 3/136 (2%)
Strand = Plus / Plus
Query: 97 ataactttataaaaaacccttgaagttagtattaactgggaaactgaaactatgaacaga 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ataactttataaaaaacccttgaagttagtattaactgggaaactgaaactatgaacaga 60
Query: 157 atataatcttaagtaaaccttgttgcctaaagaatcgagcgatggatattattaggatta 216
||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||
Sbjct: 61 atataatcttaagtaaacc-tgttgcct-aagaatcgagcgatggatattatta-gatta 117
Query: 217 gggaaaaagtaatcag 232
||||||||||||||||
Sbjct: 118 gggaaaaagtaatcag 133
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 57,605
Number of Sequences: 1807
Number of extensions: 57605
Number of successful extensions: 6704
Number of sequences better than 1.0e-20: 1
length of query: 812
length of database: 10,358,551
effective HSP length: 16
effective length of query: 796
effective length of database: 10,329,639
effective search space: 8222392644
effective search space used: 8222392644
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)