BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZE04RM1.SCF screened BAC_end
(752 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1489 190 3e-48
3x_Contig1183 105 1e-22
3x_Contig866 105 1e-22
>3x_Contig1489
Length = 10722
Score = 190 bits (96), Expect = 3e-48
Identities = 105/108 (97%)
Strand = Plus / Plus
Query: 35 actcccagattatgcatgtcttcgttaaatctgtaaaagatttctggatttcttcgtagt 94
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2317 actcccagattatgcagtgcttcgttaaatctgtaaaagatttctggatttcttcgtagt 2376
Query: 95 ctggacgaaatagcatcctcgatgacttctaattcttctaatatcttt 142
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2377 ctggacgaaatagcatcctcgatgacttctaattcttctaatatcttt 2424
>3x_Contig1183
Length = 3176
Score = 105 bits (53), Expect = 1e-22
Identities = 89/101 (88%)
Strand = Plus / Minus
Query: 652 ttttttttctatcttttttttttttttttctttttttttttttttttttttttttttttc 711
|||||||| | | |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 538 tttttttttttttttttttttttttttttttttttttttttttttttttttttttttttt 479
Query: 712 ttctctgttttttccttcttttgttttcttttttttttttt 752
|| | |||||||| || |||| |||| |||||||||||||
Sbjct: 478 ttttttgtttttttttttttttttttttttttttttttttt 438
Score = 105 bits (53), Expect = 1e-22
Identities = 89/101 (88%)
Strand = Plus / Minus
Query: 652 ttttttttctatcttttttttttttttttctttttttttttttttttttttttttttttc 711
|||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 126 ttttttttttattttttttttttttttttttttttttttttttttttttttttttttttt 67
Query: 712 ttctctgttttttccttcttttgttttcttttttttttttt 752
|| | | |||||| || |||| |||| |||||||||||||
Sbjct: 66 ttttttttttttttttttttttttttttttttttttttttt 26
Score = 105 bits (53), Expect = 1e-22
Identities = 89/101 (88%)
Strand = Plus / Minus
Query: 652 ttttttttctatcttttttttttttttttctttttttttttttttttttttttttttttc 711
|||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 245 ttttttttttattttttttttttttttttttttttttttttttttttttttttttttttt 186
Query: 712 ttctctgttttttccttcttttgttttcttttttttttttt 752
|| | | |||||| || |||| |||| |||||||||||||
Sbjct: 185 ttttttttttttttttttttttttttttttttttttttttt 145
Score = 105 bits (53), Expect = 1e-22
Identities = 89/101 (88%)
Strand = Plus / Minus
Query: 652 ttttttttctatcttttttttttttttttctttttttttttttttttttttttttttttc 711
|||||||| | | |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 554 tttttttttttttttttttttttttttttttttttttttttttttttttttttttttttt 495
Query: 712 ttctctgttttttccttcttttgttttcttttttttttttt 752
|| | | |||||| || ||||||||| |||||||||||||
Sbjct: 494 ttttttttttttttttttttttgtttttttttttttttttt 454
>3x_Contig866
Length = 4028
Score = 105 bits (53), Expect = 1e-22
Identities = 89/101 (88%)
Strand = Plus / Minus
Query: 652 ttttttttctatcttttttttttttttttctttttttttttttttttttttttttttttc 711
|||||||| | | |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 288 tttttttttttttttttttttttttttttttttttttttttttttttttttttttttttt 229
Query: 712 ttctctgttttttccttcttttgttttcttttttttttttt 752
|| | | |||||| || ||||||||| |||||||||||||
Sbjct: 228 ttttttttttttttttttttttgtttttttttttttttttt 188
Score = 105 bits (53), Expect = 1e-22
Identities = 89/101 (88%)
Strand = Plus / Minus
Query: 652 ttttttttctatcttttttttttttttttctttttttttttttttttttttttttttttc 711
|||||||| | | |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 272 tttttttttttttttttttttttttttttttttttttttttttttttttttttttttttt 213
Query: 712 ttctctgttttttccttcttttgttttcttttttttttttt 752
|| | |||||||| || |||| |||| |||||||||||||
Sbjct: 212 ttttttgtttttttttttttttttttttttttttttttttt 172
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 96,841
Number of Sequences: 1807
Number of extensions: 96841
Number of successful extensions: 17910
Number of sequences better than 1.0e-20: 3
length of query: 752
length of database: 10,358,551
effective HSP length: 16
effective length of query: 736
effective length of database: 10,329,639
effective search space: 7602614304
effective search space used: 7602614304
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)