BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZE05RM1.SCF screened BAC_end
(893 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1738 1481 0.0
>3x_Contig1738
Length = 21411
Score = 1481 bits (747), Expect = 0.0
Identities = 806/821 (98%), Gaps = 5/821 (0%)
Strand = Plus / Plus
Query: 47 ccaaaaaacacaccagaaaatacgtttttgaggaaaatgcatagagattattacctagtt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16991 ccaaaaaacacaccagaaaatacgtttttgaggaaaatgcatagagattattacctagtt 17050
Query: 107 tctattgtacaccatgatttcatcaaccctgacggattgtgggacttgctactgagttag 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17051 tctattgtacaccatgatttcatcaaccctgacggattgtgggacttgctactgagttag 17110
Query: 167 caatgtgtcctacgaattacgtttcccattggcattcaaagtaggattttgtgaatctag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17111 caatgtgtcctacgaattacgtttcccattggcattcaaagtaggattttgtgaatctag 17170
Query: 227 ttcattctgtaaatactcagtgactttctgtagtttaccgtcgttccattgctgtataag 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17171 ttcattctgtaaatactcagtgactttctgtagtttaccgtcgttccattgctgtataag 17230
Query: 287 tccatacatcagtttaaccgtactattattgaaagtaaacatgcccctattgaacttagc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17231 tccatacatcagtttaaccgtactattattgaaagtaaacatgcccctattgaacttagc 17290
Query: 347 gccaggaaggatgatcaatttggaacccaagaaacaggtcttaagagctggaattggatc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17291 gccaggaaggatgatcaatttggaacccaagaaacaggtcttaagagctggaattggatc 17350
Query: 407 caggttgattgcataaaatagattccccttcttatcttgtaagataagtttatatacatg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17351 caggttgattgcataaaatagattccccttcttatcttgtaagataagtttatatacatg 17410
Query: 467 ttgattgagatttccagcatccttgttatttgtataattactatcaccattaccaactcc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17411 ttgattgagatttccagcatccttgttatttgtataattactatcaccattaccaactcc 17470
Query: 527 agagttgttgtgatacgatgttgtaccatcgtcatcgtcatcatccaagttcacctccga 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17471 agagttgttgtgatacgatgttgtaccatcgtcatcgtcatcatccaagttcacctccga 17530
Query: 587 aatgagttgttgacggtcacgtgacgtacttagcctatccactttctgtcttcttgggtc 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17531 aatgagttgttgacggtcacgtgacgtacttagcctatccactttctgtcttcttgggtc 17590
Query: 647 aataaccacttgcaattcgtccacctgcgtcaacttggaccgcgaaatattctctatcat 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17591 aataaccacttgcaattcgtccacctgcgtcaacttggaccgcgaaatattctctatcat 17650
Query: 707 gcacacttggaataacaacggtctgtttaccggtatgagcttncgttgaaatatatcttt 766
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 17651 gcacacttggaataacaacggtctgtttaccgttatgagcttccgttgaaatatatcttt 17710
Query: 767 tgtgggccatgttttattgttgaaagcctt-acgatcaacgaaattaggtcttttaaa-c 824
||||||||||||| ||||||||||||||| |||||||||||| | |||||| |||| |
Sbjct: 17711 ggtgggccatgtttcattgttgaaagccttcacgatcaacgaattagggtcttctaaaac 17770
Query: 825 attggtaacaagtct--atgtcaacctttttgaggtcggaa 863
|||||||||| ||| |||||||||||| |||||||||||
Sbjct: 17771 attggtaaca-gtcgtaatgtcaacctttctgaggtcggaa 17810
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6545
Number of Sequences: 1807
Number of extensions: 6545
Number of successful extensions: 83
Number of sequences better than 1.0e-20: 1
length of query: 893
length of database: 10,358,551
effective HSP length: 16
effective length of query: 877
effective length of database: 10,329,639
effective search space: 9059093403
effective search space used: 9059093403
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)