BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZE06FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1184 1362 0.0
>3x_Contig1184
Length = 5183
Score = 1362 bits (687), Expect = 0.0
Identities = 747/762 (98%), Gaps = 4/762 (0%)
Strand = Plus / Plus
Query: 87 cctcatctcatctcatctcgatggtaaagagagtaaaaagaacctgaataaggattagta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2653 cctcatctcatctcatctcgatggtaaagagagtaaaaagaacctgaataaggattagta 2712
Query: 147 ggcattcgaagagagcaactgggaagcatcaagacactatttgaatataccaggataaaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2713 ggcattcgaagagagcaactgggaagcatcaagacactatttgaatataccaggataaaa 2772
Query: 207 tatggtattgaaatcgacttctgctagtgaaatttcggtataccaagtaagtggtaccaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2773 tatggtattgaaatcgacttctgctagtgaaatttcggtataccaagtaagtggtaccaa 2832
Query: 267 tgttgcacggtcattaccagattggattgccaagaaacgtaagagatcattgaagaatga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2833 tgttgcacggtcattaccagattggattgccaagaaacgtaagagatcattgaagaatga 2892
Query: 327 cttggaataccagaatagagttgagttgattcaagattttgagtttagcgaagcctccaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2893 cttggaataccagaatagagttgagttgattcaagattttgagtttagcgaagcctccaa 2952
Query: 387 taaaattaaagtcactccggatgggaattatgtgatggctactggtacttacaaacctca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2953 taaaattaaagtcactccggatgggaattatgtgatggctactggtacttacaaacctca 3012
Query: 447 aattcatgtttatgattttagtaatctatcattgaaatttgagagacatacagatgccga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3013 aattcatgtttatgattttagtaatctatcattgaaatttgagagacatacagatgccga 3072
Query: 507 gaacatagacttctgtatactttctgaggactggactaaatccgttcatttacagaatga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3073 gaacatagacttctgtatactttctgaggactggactaaatccgttcatttacagaatga 3132
Query: 567 tagaaccattcagttccaaaataaaggtggtatccattacactactcgtattcccaaatt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3133 tagaaccattcagttccaaaataaaggtggtatccattacactactcgtattcccaaatt 3192
Query: 627 tggtaggtccttagcatacaataaagtgaactgtgacttatacgtcggcgcatcatcgaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3193 tggtaggtccttagcatacaataaagtgaactgtgacttatacgtcggcgcatcatcgaa 3252
Query: 687 tgaactttatagattaaatttggagcagggtagggttttaaaccctttcaaactgnatac 746
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 3253 tgaactttatagattaaatttggagcagggtaggtttttaaaccctttcaaactggatac 3312
Query: 747 aagaagttgttaatcatgtattcatcaatgaggtggaatgggatattagccgcatccatg 806
||||| |||||||||||||| |||||||||||| |||||| ||||||| |||||||||
Sbjct: 3313 -agaaggtgttaatcatgtatccatcaatgaggt-gaatggattattagcagcatccatg 3370
Query: 807 ggaacaaacgttggttgaaatttggggatccaggaagtaggt 848
| |||||||| | |||| ||||| |||||||| |||||||||
Sbjct: 3371 gaaacaaacg-tcgttg-aattttgggatccaagaagtaggt 3410
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7680
Number of Sequences: 1807
Number of extensions: 7680
Number of successful extensions: 348
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)