BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZE08FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1670 1291 0.0
>3x_Contig1670
Length = 9382
Score = 1291 bits (651), Expect = 0.0
Identities = 701/713 (98%), Gaps = 4/713 (0%)
Strand = Plus / Minus
Query: 87 caacaaatcattacgtggcaaagtccgaagattcctatattagtgggctcctatcaacaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6319 caacaaatcattacgtggcaaagtccgaagattcctatattagtgggctcctatcaacaa 6260
Query: 147 gcgttctcctacctggtgccgatatttgttattttgttttatcatttcgacaaactcatt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6259 gcgttctcctacctggtgccgatatttgttattttgttttatcatttcgacaaactcatt 6200
Query: 207 tctttgatctctcagagatgctattgaaattaaagaaggaggcagtttgcatcaaccatg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6199 tctttgatctctcagagatgctattgaaattaaagaaggaggcagtttgcatcaaccatg 6140
Query: 267 atgtagtgattagtttagacgcattggtgcggttgataactagctgctttgtttaaattt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6139 atgtagtgattagtttagacgcattggtgcggttgataactagctgctttgtttaaattt 6080
Query: 327 cattgtaagttatttgttgagaaacgtcaaattaaccttgtaattatgccattaatggaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6079 cattgtaagttatttgttgagaaacgtcaaattaaccttgtaattatgccattaatggaa 6020
Query: 387 tgactggaaattcttgataaaaaagaacaggtgcatatatcatgtttaacactgtgaaat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6019 tgactggaaattcttgataaaaaagaacaggtgcatatatcatgtttaacactgtgaaat 5960
Query: 447 ttagctcgctacatttccggtaaattagaaacaatatagataaactattaattttgtgac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5959 ttagctcgctacatttccggtaaattagaaacaatatagataaactattaattttgtgac 5900
Query: 507 catatcagtactctaattacttgatgattagcttttatgagcgtttcctttattgaaata 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5899 catatcagtactctaattacttgatgattagcttttatgagcgtttcctttattgaaata 5840
Query: 567 cgcgatatagagtttcagttcatgatttaattagatttcgaaaaggagaccaaactttct 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5839 cgcgatatagagtttcagttcatgatttaattagatttcgaaaaggagaccaaactttct 5780
Query: 627 ttgaaaagtcgtattaagcaaggatcatganatcactattggctgcctactt-agacaag 685
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 5779 ttgaaaagtcgtattaagcaaggatcatgaaatcactattggctgcctacttaagacaag 5720
Query: 686 ggacttgatttcagaccatgcataattttttgccgataagattattttcgatgaatatat 745
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5719 ggacttgatttcagaccatgcataattttttgccgataagattattttcgatgataata- 5661
Query: 746 ttagatactagcanaggttgaaggattagcacagcttaaaaaagtgttttttt 798
||||||||||||| | || ||| |||||||||||| ||| ||||| |||||||
Sbjct: 5660 ttagatactagcaaaagtagaa-gattagcacagc-taagaaagttttttttt 5610
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7250
Number of Sequences: 1807
Number of extensions: 7250
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)