BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC27ZE08RM1.SCF screened BAC_end
         (907 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig311                                                         1178   0.0  

>3x_Contig311 
          Length = 2249

 Score = 1178 bits (594), Expect = 0.0
 Identities = 671/689 (97%), Gaps = 6/689 (0%)
 Strand = Plus / Minus

                                                                        
Query: 48   tcttgtaagttcttcagaactatcttataaaatatttctcctgagtcttttgtttacatt 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1276 tcttgtaagttcttcagaactatcttataaaatatttctcctgagtcttttgtttacatt 1217

                                                                        
Query: 108  tgattccgcccgaacaatgatagctgcagtgttttcaagaaatcctcgaaactttatttt 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1216 tgattccgcccgaacaatgatagctgcagtgttttcaagaaatcctcgaaactttatttt 1157

                                                                        
Query: 168  ttttattcttttgttttcgtttttgtttttgtttttgttttcgttttggattcaatgtta 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1156 ttttattcttttgttttcgtttttgtttttgtttttgttttcgttttggattcaatgtta 1097

                                                                        
Query: 228  ttttgaagatctgtatttctttctaccctcgatttcttctttgtacataactaagaataa 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 ttttgaagatctgtatttctttctaccctcgatttcttctttgtacataactaagaataa 1037

                                                                        
Query: 288  gttataaagtagaattgagtcagttggttctggattgcactgctgacatcaattgagttg 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 gttataaagtagaattgagtcagttggttctggattgcactgctgacatcaattgagttg 977

                                                                        
Query: 348  ttgaagattgtattaagggtgaaaagagactgttctgaaccgggttttatcgagcaagan 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 976  ttgaagattgtattaagggtgaaaagagactgttctgaaccgggttttatcgagcaagaa 917

                                                                        
Query: 408  acgtcattatttgtttccacctctgttttatcagtatttatttcgtgaagagcataaaaa 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916  acgtcattatttgtttccacctctgttttatcagtatttatttcgtgaagagcataaaaa 857

                                                                        
Query: 468  aaaactgtgccgcatacataggttactgaattcgctgatatatactttgacaactcttat 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856  aaaactgtgccgcatacataggttactgaattcgctgatatatactttgacaactcttat 797

                                                                        
Query: 528  tcattctatcataccatcttttaacaatggactctcttgataata-tataccatttactg 586
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 796  tcattctatcataccatcttttaacaatggactctcttgataatattataccatttactg 737

                                                                        
Query: 587  cacacgcttttttaagacccgagtcgaagcagtgcttgtttaattc-attttagaacggc 645
            |||||||||||||||||||||||||||||||||||||||||||||| |||| |||| || 
Sbjct: 736  cacacgcttttttaagacccgagtcgaagcagtgcttgtttaattcaatttcagaatggt 677

                                                                        
Query: 646  cgttacttc-aggaaaac-atgcttattttgggtttctcct-gatttgaaatggtt-gga 701
            ||||||||| |||||||| |||||||||| ||||| ||||| |||||||||| ||| |||
Sbjct: 676  cgttacttcaaggaaaacaatgcttatttagggttcctcctggatttgaaattgttagga 617

                                         
Query: 702  ttgaagagaacctctttgatttaatttca 730
             ||||||||||  || ||||| |||||||
Sbjct: 616  ctgaagagaactcctctgattcaatttca 588


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,161
Number of Sequences: 1807
Number of extensions: 12161
Number of successful extensions: 204
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)