BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC27ZE08RM1.SCF screened BAC_end (907 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig311 1178 0.0 >3x_Contig311 Length = 2249 Score = 1178 bits (594), Expect = 0.0 Identities = 671/689 (97%), Gaps = 6/689 (0%) Strand = Plus / Minus Query: 48 tcttgtaagttcttcagaactatcttataaaatatttctcctgagtcttttgtttacatt 107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1276 tcttgtaagttcttcagaactatcttataaaatatttctcctgagtcttttgtttacatt 1217 Query: 108 tgattccgcccgaacaatgatagctgcagtgttttcaagaaatcctcgaaactttatttt 167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1216 tgattccgcccgaacaatgatagctgcagtgttttcaagaaatcctcgaaactttatttt 1157 Query: 168 ttttattcttttgttttcgtttttgtttttgtttttgttttcgttttggattcaatgtta 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1156 ttttattcttttgttttcgtttttgtttttgtttttgttttcgttttggattcaatgtta 1097 Query: 228 ttttgaagatctgtatttctttctaccctcgatttcttctttgtacataactaagaataa 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1096 ttttgaagatctgtatttctttctaccctcgatttcttctttgtacataactaagaataa 1037 Query: 288 gttataaagtagaattgagtcagttggttctggattgcactgctgacatcaattgagttg 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1036 gttataaagtagaattgagtcagttggttctggattgcactgctgacatcaattgagttg 977 Query: 348 ttgaagattgtattaagggtgaaaagagactgttctgaaccgggttttatcgagcaagan 407 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 976 ttgaagattgtattaagggtgaaaagagactgttctgaaccgggttttatcgagcaagaa 917 Query: 408 acgtcattatttgtttccacctctgttttatcagtatttatttcgtgaagagcataaaaa 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 916 acgtcattatttgtttccacctctgttttatcagtatttatttcgtgaagagcataaaaa 857 Query: 468 aaaactgtgccgcatacataggttactgaattcgctgatatatactttgacaactcttat 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 856 aaaactgtgccgcatacataggttactgaattcgctgatatatactttgacaactcttat 797 Query: 528 tcattctatcataccatcttttaacaatggactctcttgataata-tataccatttactg 586 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 796 tcattctatcataccatcttttaacaatggactctcttgataatattataccatttactg 737 Query: 587 cacacgcttttttaagacccgagtcgaagcagtgcttgtttaattc-attttagaacggc 645 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||| || Sbjct: 736 cacacgcttttttaagacccgagtcgaagcagtgcttgtttaattcaatttcagaatggt 677 Query: 646 cgttacttc-aggaaaac-atgcttattttgggtttctcct-gatttgaaatggtt-gga 701 ||||||||| |||||||| |||||||||| ||||| ||||| |||||||||| ||| ||| Sbjct: 676 cgttacttcaaggaaaacaatgcttatttagggttcctcctggatttgaaattgttagga 617 Query: 702 ttgaagagaacctctttgatttaatttca 730 |||||||||| || ||||| ||||||| Sbjct: 616 ctgaagagaactcctctgattcaatttca 588 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,161 Number of Sequences: 1807 Number of extensions: 12161 Number of successful extensions: 204 Number of sequences better than 1.0e-20: 1 length of query: 907 length of database: 10,358,551 effective HSP length: 16 effective length of query: 891 effective length of database: 10,329,639 effective search space: 9203708349 effective search space used: 9203708349 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)