BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZE09RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1583 1076 0.0
>3x_Contig1583
Length = 12509
Score = 1076 bits (543), Expect = 0.0
Identities = 618/638 (96%), Gaps = 4/638 (0%)
Strand = Plus / Plus
Query: 37 gcttgatctatcc-tgcttacatactttgccttatgcctttgaccacactaaaggatact 95
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7434 gcttgatctatccatgcttacatactttgccttatgcctttgaccacactaaaggatact 7493
Query: 96 atcatatccgggtaacatattatcaacatttaaaattgtgatgagctaaatcatatcaac 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7494 atcatatccgggtaacatattatcaacatttaaaattgtgatgagctaaatcatatcaac 7553
Query: 156 atatttactatgcatacataagacagtattatttagcaaagttaagatctatctgtgaca 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7554 atatttactatgcatacataagacagtattatttagcaaagttaagatctatctgtgaca 7613
Query: 216 ttcgaaccgaccaatacatttgtaccttagggaaagaacagaagtacacattgccatgag 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7614 ttcgaaccgaccaatacatttgtaccttagggaaagaacagaagtacacattgccatgag 7673
Query: 276 cggcttacccccaccgccgccaccgcctccgggatttcccagttatgatataacttcaaa 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7674 cggcttacccccaccgccgccaccgcctccgggatttcccagttatgatataacttcaaa 7733
Query: 336 gaatcacaaatctaaaggtaacgagatggagaagcatagaagtccagtaggtgcgccacc 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7734 gaatcacaaatctaaaggtaacgagatggagaagcatagaagtccagtaggtgcgccacc 7793
Query: 396 acctccaccacctggtttttccagggtagatctgggaccaccaccgnccccgcctcctgg 455
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 7794 acctccaccacctggtttttccagggtagatctgggaccaccaccgcccccgcctcctgg 7853
Query: 456 aattcagccaggtatagatattctttctgattaagcgaagaataacttaccaccttcacc 515
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 7854 aattcagccaggtatagatattctttctgataaagcgaagaataacttaccacctccacc 7913
Query: 516 accaccaccttcatcgtcatctttaacatttatgattgacgaaacacagaatgacgatca 575
|||||||||| |||||||||||| ||||| |||||| |||||| ||||||||||||||||
Sbjct: 7914 accaccacctccatcgtcatcttcaacatctatgatagacgaagcacagaatgacgatca 7973
Query: 576 gcactttaacggtctttcgagggattccaaaaagatcaggaaaagggaagaaaaagattg 635
||||| ||||||||||||||||||| | |||||||||||| ||||||||| |||||| |
Sbjct: 7974 gcactataacggtctttcgagggatacaaaaaagatcagg-aaagggaag-aaaagagta 8031
Query: 636 cctcagaaaaaatcggggcttagttttttcacataagg 673
||||||||||||| |||||||||| |||||||||||
Sbjct: 8032 gctcagaaaaaatc-gggcttagttcattcacataagg 8068
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7574
Number of Sequences: 1807
Number of extensions: 7574
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)