BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZE10FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1321 1015 0.0
>3x_Contig1321
Length = 8217
Score = 1015 bits (512), Expect = 0.0
Identities = 547/556 (98%), Gaps = 2/556 (0%)
Strand = Plus / Minus
Query: 76 attaaatgacaataacttaacaagtttacctgcggaaatcaagtactcaaaaaaactaat 135
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 7660 attaaatgacaataacttaacaagttgtactgcggaaatcaagtactcaaaaaaactaat 7601
Query: 136 tcatttttctgccgccaacaacaagttggatagtattccggaagaaataggagaactctc 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7600 tcatttttctgccgccaacaacaagttggatagtattccggaagaaataggagaactctc 7541
Query: 196 caatcttaaatcacttgatttacattgtaataatattagagaattacccatttcaattgt 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7540 caatcttaaatcacttgatttacattgtaataatattagagaattacccatttcaattgt 7481
Query: 256 aaatttagagctaacaacattaaatttctcctctaatttacttggctacaaccccggatt 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7480 aaatttagagctaacaacattaaatttctcctctaatttacttggctacaaccccggatt 7421
Query: 316 agaggactatgaaaatacccctttatcaaaatcattactatttctcaatactgctgacaa 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7420 agaggactatgaaaatacccctttatcaaaatcattactatttctcaatactgctgacaa 7361
Query: 376 caatctcaataatgagatgcttcctttattcaacttcaacactagcttgaagataatcaa 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7360 caatctcaataatgagatgcttcctttattcaacttcaacactagcttgaagataatcaa 7301
Query: 436 tctttcttataatgatatttctgatatttctgcattaaacctaccatcgttgacagagtt 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7300 tctttcttataatgatatttctgatatttctgcattaaacctaccatcgttgacagagtt 7241
Query: 496 gaatctatccggcaatgctatcaccagcttgcccggtgaagtgttccaaagaatgaagaa 555
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7240 gtatctatccggcaatgctatcaccagcttgcccggtgaagtgttccaaagaatgaagaa 7181
Query: 556 tttgagggtgataatgttaaatggtaataagctgatgtcactaccatctgggcctctctc 615
||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 7180 tttgaaggtgataatgttaaatggtaataagctgatgtcactaccatc-ggagctctctc 7122
Query: 616 aacttttcgaatttga 631
||| ||||||||||||
Sbjct: 7121 aac-tttcgaatttga 7107
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8257
Number of Sequences: 1807
Number of extensions: 8257
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)