BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZE11FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1707 1166 0.0
>3x_Contig1707
Length = 16216
Score = 1166 bits (588), Expect = 0.0
Identities = 623/632 (98%), Gaps = 2/632 (0%)
Strand = Plus / Plus
Query: 86 aacaatgattggaaatctgttccctcacaaggtatttggtttaatatgcagtacaagtgc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13698 aacaatgattggaaatctgttccctcacaaggtatttggtttaatatgcagtacaagtgc 13757
Query: 146 tcgatatagtctttgtgcgtattatcttcatcttcattttcgatatctacaatagtaaat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13758 tcgatatagtctttgtgcgtattatcttcatcttcattttcgatatctacaatagtaaat 13817
Query: 206 cggcgtaacattttttttttagaaaattgactctgaactgtctttaagcttagtgatgat 265
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13818 cggcgtaacatcttgattttagaaaattgactctgaactgtctttaagcttagtgatgat 13877
Query: 266 atgttattgtagttactgtacgctacggtaccaaaatctggaaattctttaaggctgttt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13878 atgttattgtagttactgtacgctacggtaccaaaatctggaaattctttaaggctgttt 13937
Query: 326 tcaatgtcttcgatggtcgttatgagagtactgttcgtgacatcagtggtacactgtaaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13938 tcaatgtcttcgatggtcgttatgagagtactgttcgtgacatcagtggtacactgtaaa 13997
Query: 386 caagaaaaatgtgaccattgaaacctgaattttaacttcgtagaaagaggttttgatagc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13998 caagaaaaatgtgaccattgaaacctgaattttaacttcgtagaaagaggttttgatagc 14057
Query: 446 agcatttcataccatctaactatctttctctgtaatttattacgttgcgattcaagttca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14058 agcatttcataccatctaactatctttctctgtaatttattacgttgcgattcaagttca 14117
Query: 506 ttgtatttttgcccctgcgcctttttattagcaagatcgttacagatattttccatcata 565
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 14118 ttgtatttttgcccctgcgcctttttattagcaagatcgttacagatatttcccatcata 14177
Query: 566 tttgtcatgatttcaaaaattgatacagctattgaaacagttgattcatccgtagatggt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14178 tttgtcatgatttcaaaaattgatacagctattgaaacagttgattcatccgtagatggt 14237
Query: 626 tctatcatttgatagagatccacttctatggccattgagaaaaattccaccacctaatac 685
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 14238 tctatcatttgatagagattcacttctatggccattgagaaaaattccaccacctcatac 14297
Query: 686 aatgcctggactcccaaaaataatttgtaact 717
|||| ||||||| ||||||||||| |||||||
Sbjct: 14298 aatg-ctggact-ccaaaaataatctgtaact 14327
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9313
Number of Sequences: 1807
Number of extensions: 9313
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)