BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZE11RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1653 1271 0.0
>3x_Contig1653
Length = 14012
Score = 1271 bits (641), Expect = 0.0
Identities = 676/685 (98%), Gaps = 2/685 (0%)
Strand = Plus / Minus
Query: 41 gcttgctttcaacacaataagtttcccgacaacggaagcaaccctccaaaattttgcggt 100
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 6475 gcttgctttcaacacaataagttacccgacaacggaagcaaccctccaaaattttgcggt 6416
Query: 101 tttggcgtccacaaaacaggaatctcccccaatcttgatgaagatttttgattaactaat 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6415 tttggcgtccacaaaacaggaatctcccccaatcttgatgaagatttttgattaactaat 6356
Query: 161 catattgtggttcacgggcgttattcgagtcactaacttttccctttactaatgctctca 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 6355 catattgtggttcacgggcgttattcgagtcactaacttttccctttactaatgcgcaca 6296
Query: 221 catagagtatcagaataacttcgtcgaacgtgactatacacccatacatcactatactat 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6295 catagagtatcagaataacttcgtcgaacgtgactatacacccatacatcactatactat 6236
Query: 281 ctggctgtatttcttccctgtgtttggttgtaaacagctctacatggattttttttttgt 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6235 ctggctgtatttcttccctgtgtttggttgtaaacagctctacatggattttttttttgt 6176
Query: 341 aacgcaactacgagataaaaaaaaatgaccaagcaaaaaggattagcacctccttctaat 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6175 aacgcaactacgagataaaaaaaaatgaccaagcaaaaaggattagcacctccttctaat 6116
Query: 401 actcttattgcaagggggaaagaacagtaagcaggaaatcacgagaatgaactaaactgt 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6115 actcttattgcaagggggaaagaacagtaagcaggaaatcacgagaatgaactaaactgt 6056
Query: 461 aactccctatttctttgcctgaagctgatctgttgcatcacggaaaagtaatggatcttc 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6055 aactccctatttctttgcctgaagctgatctgttgcatcacggaaaagtaatggatcttc 5996
Query: 521 aattactcatttacaccagttgcgcctagtaccaccactatcaagaggacccgttccgtt 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5995 aattactcatttacaccagttgcgcctagtaccaccactatcaagaggacccgttccgtt 5936
Query: 581 cttctgtgaatatgacgatcataactgctatcgttaaaaacgatgtcaagttttccgaag 640
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 5935 ctactgtgaatatgacgatcataactgctatcgttaaaaacgatgtcaag-tttccgaag 5877
Query: 641 cattttcttacccgcactctcattgtacgcctcccaaaattattatgctggggtttttgc 700
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 5876 cattttcttacccgcactctcatgtaacgcctcccaaaattattatgct-gggtttttgc 5818
Query: 701 gtttttgtatgcgctgtcatgttta 725
|||||||||||||||||||||||||
Sbjct: 5817 gtttttgtatgcgctgtcatgttta 5793
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,183
Number of Sequences: 1807
Number of extensions: 14183
Number of successful extensions: 81
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)