BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZE12FM1.SCF screened BAC_end
(983 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig991 946 0.0
3x_Contig1391 258 2e-68
>3x_Contig991
Length = 2941
Score = 946 bits (477), Expect = 0.0
Identities = 525/533 (98%), Gaps = 6/533 (1%)
Strand = Plus / Plus
Query: 86 tacaaaaaattaatgttaataaaatgaaaaacttttgataattcaaatgaatttgagaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 tacaaaaaattaatgttaataaaatgaaaaacttttgataattcaaatgaatttgagaaa 1015
Query: 146 ttaagatttttcagatctaaattagcgaaagctaagatgtgtagttcttaaaagtaatgg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 ttaagatttttcagatctaaattagcgaaagctaagatgtgtagttcttaaaagtaatgg 1075
Query: 206 atgaccattatttttgtgtaaattgtcaaaatttacatcttcatttttataaaaattgaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 atgaccattatttttgtgtaaattgtcaaaatttacatcttcatttttataaaaattgaa 1135
Query: 266 tatatatttttcattttcaaaatctaaacgttgaaacaccttttgttttttgctttatcc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1136 tatatatttttcattttcaaaatctaaacgttgaaacaccttttgttttttgctttatcc 1195
Query: 326 aacatgtaattataaaactcaatactacccgaagcgtaagctatcctcattaaatctata 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1196 aacatgtaattataaaactcaatactacccgaagcgtaagctatcctcattaaatctata 1255
Query: 386 tctgcggtaaacatatcaggatctctggaagcatattcattatagcataatttactataa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1256 tctgcggtaaacatatcaggatctctggaagcatattcattatagcataatttactataa 1315
Query: 446 tagcatatctttgatctggaaagtctataagtaatttttgaacaatgtatctatttaaag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1316 tagcatatctttgatctggaaagtctataagtaatttttgaacaatgtatctatttaaag 1375
Query: 506 ttttataagtattgaaattaaaaggtctataaagagatacaaaaatgtggatcataaatt 565
|||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 1376 ttttataagtatagaaataaaaaggtctataaagagatac-aaaatgtggatcataaa-t 1433
Query: 566 atcgttttacttaataaatttgctacctgctttccctacataactcatcggga 618
|||| ||||| |||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 1434 atcg-tttac-taataaatttgcta-ctgcttt-cctacataactcatcggga 1482
>3x_Contig1391
Length = 4978
Score = 258 bits (130), Expect = 2e-68
Identities = 194/214 (90%), Gaps = 1/214 (0%)
Strand = Plus / Plus
Query: 86 tacaaaaaattaatgttaataaaatgaaaaacttttgataattcaaatgaatttgagaaa 145
|||||||||||||| |||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct: 4728 tacaaaaaattaatattaataaatctaaaaacttt-gataatttaaatgaatttgagaaa 4786
Query: 146 ttaagatttttcagatctaaattagcgaaagctaagatgtgtagttcttaaaagtaatgg 205
|||||||||||||||||||||||| ||||| |||||||||| | |||||||||||||||
Sbjct: 4787 ataagatttttcagatctaaattagggaaagttaagatgtgtggctcttaaaagtaatgg 4846
Query: 206 atgaccattatttttgtgtaaattgtcaaaatttacatcttcatttttataaaaattgaa 265
|||||||||||| ||||||||||||||||||| ||||||||||| ||||| | | || ||
Sbjct: 4847 atgaccattattcttgtgtaaattgtcaaaatctacatcttcatatttatgatatttaaa 4906
Query: 266 tatatatttttcattttcaaaatctaaacgttga 299
|||||||||||| ||||||||||||||| |||||
Sbjct: 4907 tatatatttttcgttttcaaaatctaaatgttga 4940
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,899
Number of Sequences: 1807
Number of extensions: 13899
Number of successful extensions: 131
Number of sequences better than 1.0e-20: 2
length of query: 983
length of database: 10,358,551
effective HSP length: 16
effective length of query: 967
effective length of database: 10,329,639
effective search space: 9988760913
effective search space used: 9988760913
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)