BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZE12RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig267 1144 0.0
>3x_Contig267
Length = 1905
Score = 1144 bits (577), Expect = 0.0
Identities = 652/672 (97%), Gaps = 4/672 (0%)
Strand = Plus / Plus
Query: 35 gcttaatgactccctaa-ggaaaataatgacttgaaaaatactaagatcaaacagctaaa 93
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gcttaatgactccctaaaggaaaataatgacttgaaaaatactaagatcaaacagctaaa 505
Query: 94 aagtgaagttgatgaattacagacacgtcttgaggtcgaaatatttaaaaatacccaatt 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aagtgaagttgatgaattacagacacgtcttgaggtcgaaatatttaaaaatacccaatt 565
Query: 154 acaacaagcaaagtcaaaaccggtaaagacgaaagacgatggtactgcacaattaccagc 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 acaacaagcaaagtcaaaaccggtaaagacgaaagacgatggtactgcacaattaccagc 625
Query: 214 tgtatcaacaggtagtaaattacccagtactacaaccaacttgcttttattaagttctat 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tgtatcaacaggtagtaaattacccagtactacaaccaacttgcttttattaagttctat 685
Query: 274 ctcggcaggggctttggctgctgtgtttaaatatgcaacaaagtaaaactaatcataaat 333
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 686 ctcggcaggggctttggctgctgtgtttaaatatgca-caaagtaaaactaatcataaat 744
Query: 334 atcattcttaaagtaaaaattaatctaagcatttcttgcagactacgggtgatgcgtcta 393
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atcattctttaagtaaaaattaatctaagcatttcttgcagactacgggtgatgcgtcta 804
Query: 394 atcagtgtaaatgggtaaatcatcaagttgaattctctctactgtggtaatgcccaaaag 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atcagtgtaaatgggtaaatcatcaagttgaattctctctactgtggtaatgcccaaaag 864
Query: 454 tttagctaattgattcacgaatgcaactgctacatcattaacagaggtagaactatcagg 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 tttagctaattgattcacgaatgcaactgctacatcattaacagaggtagaactatcagg 924
Query: 514 gacttgttctcttatggaagtggcttttttttctgacagcccgcacat-gtaaaacttgn 572
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 925 gacttgttctcttatggaagtggcttttttttctgacagcccgcacatggtaaaac-tgt 983
Query: 573 tcatataagacaagtctgggtcaacgttaatacaaataccatgtgaggtgacagatcttt 632
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 tcatataagacaagtctgggtcaacgttaatacaaataccatgtgaggtgacagatcttc 1043
Query: 633 tgacatgtattgccatactggcaatttttttttgtttaaaaaccaaaaccccggattaat 692
|||||||||| | |||||||||||||||| ||| ||| | ||| |||| |||| | ||
Sbjct: 1044 tgacatgtatgccaatactggcaattttttcttgattagagacccaaacgccggtatcat 1103
Query: 693 tgggtttttggg 704
||| ||||||||
Sbjct: 1104 tggttttttggg 1115
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8939
Number of Sequences: 1807
Number of extensions: 8939
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)