BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC27ZF01FM1.SCF screened BAC_end (964 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1227 1273 0.0 >3x_Contig1227 Length = 6330 Score = 1273 bits (642), Expect = 0.0 Identities = 686/698 (98%), Gaps = 2/698 (0%) Strand = Plus / Minus Query: 86 ccgaaaacacaagaactactgagcctagagcaacctttcaccagtggtaacactgtagac 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4602 ccgaaaacacaagaactactgagcctagagcaacctttcaccagtggtaacactgtagac 4543 Query: 146 tctaacaacaaacccgcatccttacccaccccaccaagatcaagaaaaaacaacaagctc 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4542 tctaacaacaaacccgcatccttacccaccccaccaagatcaagaaaaaacaacaagctc 4483 Query: 206 tatcattcacaacaactaactcctggatgggaatctggctttaaaaggatgctaattcat 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4482 tatcattcacaacaactaactcctggatgggaatctggctttaaaaggatgctaattcat 4423 Query: 266 acccaaggtgtattttatcaggataccttggtgagtgttttgtttagagtggaaaccaag 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4422 acccaaggtgtattttatcaggataccttggtgagtgttttgtttagagtggaaaccaag 4363 Query: 326 gaagagcaaccatcaacaagcaagatcacattcacatatgtgaacaaatcagattgggaa 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4362 gaagagcaaccatcaacaagcaagatcacattcacatatgtgaacaaatcagattgggaa 4303 Query: 386 attacaggattaagttgtgagattattccacttcgtgcggacaacaacccaccatatgtg 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4302 attacaggattaagttgtgagattattccacttcgtgcggacaacaacccaccatatgtg 4243 Query: 446 ctgcaagtcttgcaatcaccggattcaaagttagcaccgtccaacggcagaacatcatat 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4242 ctgcaagtcttgcaatcaccggattcaaagttagcaccgtccaacggcagaacatcatat 4183 Query: 506 acttttgagataacaacaaggttcccattcccacaagaacatgcatctttgttgtcatcg 565 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4182 acttttgagataacaacaaggttcccattcccacaagaacatgcatctttgttgtcatcg 4123 Query: 566 caatttaaatgtggcggtcagtactgtagtcacaggctaaaaattggttataccattctc 625 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4122 caatttaaatgtggcggtcagtactgtagtcacaggctaaaaattggttataccattctc 4063 Query: 626 tctacactattacctcgtataagtgagattaagttagccccagtcgttcaacgttggaag 685 |||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct: 4062 tctacactatcacctcgtatcagtgagattaagttagcccagttcgttcaacgttggaag 4003 Query: 686 tcaatcggtgatttctcttggaatagcgggcgaacatgtagacgttgttgaatgcccaca 745 ||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||| ||| Sbjct: 4002 tcaatcggtga-ttctcttggaaaagcgggcgaacatgtagacgttgtcgaatgccaaca 3944 Query: 746 tacaaattt-ccaaaattaatgaaaaccctgtcaaaag 782 ||||||||| | |||||||||||||||| ||||||||| Sbjct: 3943 tacaaatttacaaaaattaatgaaaaccatgtcaaaag 3906 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5899 Number of Sequences: 1807 Number of extensions: 5899 Number of successful extensions: 30 Number of sequences better than 1.0e-20: 1 length of query: 964 length of database: 10,358,551 effective HSP length: 16 effective length of query: 948 effective length of database: 10,329,639 effective search space: 9792497772 effective search space used: 9792497772 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)