BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC27ZF01RM1.SCF screened BAC_end
         (939 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1032                                                         486   e-137

>3x_Contig1032 
          Length = 3920

 Score =  486 bits (245), Expect = e-137
 Identities = 245/245 (100%)
 Strand = Plus / Minus

                                                                       
Query: 49  ctttatataacaaaatcaatcccggtatgcttcgtaaaggagaacctaacaacaaggtca 108
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ctttatataacaaaatcaatcccggtatgcttcgtaaaggagaacctaacaacaaggtca 193

                                                                       
Query: 109 atttctaatcaactacacaccactattagtatatatttataagatttacaacaagtaagt 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 atttctaatcaactacacaccactattagtatatatttataagatttacaacaagtaagt 133

                                                                       
Query: 169 aaaccctgtgtgtaactaagacacagtataacacacagtaataataaagagataatagca 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 aaaccctgtgtgtaactaagacacagtataacacacagtaataataaagagataatagca 73

                                                                       
Query: 229 tgagcagattaaagtacagtgccgttccagggtatttcaccagttttggtgatgaaaacg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  tgagcagattaaagtacagtgccgttccagggtatttcaccagttttggtgatgaaaacg 13

                
Query: 289 ttctg 293
           |||||
Sbjct: 12  ttctg 8


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6838
Number of Sequences: 1807
Number of extensions: 6838
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)