BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC27ZF02FM1.SCF screened BAC_end
         (949 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1794                                                        1251   0.0  

>3x_Contig1794 
          Length = 36744

 Score = 1251 bits (631), Expect = 0.0
 Identities = 683/695 (98%), Gaps = 4/695 (0%)
 Strand = Plus / Plus

                                                                         
Query: 87    tttctcattttcgaacttcgcccagtagggataatctgtttcaaactccaaatccaaacc 146
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23194 tttctcattttcgaacttcgcccagtagggataatctgtttcaaactccaaatccaaacc 23253

                                                                         
Query: 147   tttgtatctccaagcatgtagatatagctctaacgattctggagttggatcttttggcat 206
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23254 tttgtatctccaagcatgtagatatagctctaacgattctggagttggatcttttggcat 23313

                                                                         
Query: 207   ttcttcgtcgcattcttgacatcgttcttgattttcattcaattgatcccagacatcatc 266
             |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23314 ttcttcgtcgcattcaggacatcgttcttgattttcattcaattgatcccagacatcatc 23373

                                                                         
Query: 267   cagttcaacctcgaaccgcttccgtagcttttcgattctttcgtttgttagttgagtcca 326
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23374 cagttcaacctcgaaccgcttccgtagcttttcgattctttcgtttgttagttgagtcca 23433

                                                                         
Query: 327   atctggggtctcaataataaaccttgaccgtaatgggtacgttgagttatcaaggttata 386
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23434 atctggggtctcaataataaaccttgaccgtaatgggtacgttgagttatcaaggttata 23493

                                                                         
Query: 387   aaacggatcgtttgtaatggggtgtccctgtcttgccaaatggatacgaatttgatgtgt 446
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23494 aaacggatcgtttgtaatggggtgtccctgtcttgccaaatggatacgaatttgatgtgt 23553

                                                                         
Query: 447   tcttcccgtgaaaggtttgcataatacaattgattgatcagttacggcatcgtattccat 506
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23554 tcttcccgtgaaaggtttgcataatacaattgattgatcagttacggcatcgtattccat 23613

                                                                         
Query: 507   taattcaaactcagtatgtgcgtctttcaaaggggataatggctctgatttaattttcaa 566
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23614 taattcaaactcagtatgtgcgtctttcaaaggggataatggctctgatttaattttcaa 23673

                                                                         
Query: 567   gtcacaggtatagatttgggatttatcaactgcagtttcaggaaattttccttttactct 626
             |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23674 gtcacaggtatagattggggatttatcaactgcagtttcaggaaattttccttttactct 23733

                                                                         
Query: 627   agctagataatatttctttatatcacgatctcttattttagattgaactctgttagcatc 686
             |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 23734 agctagataatatttcttcatatcacgatctcttatcttagattgaactctgttagcatc 23793

                                                                         
Query: 687   gatgggatttttggccag-attagtaaaccagaagtgatcttttcc-aaccataacatgg 744
             |||||||||||||||||| || |||||||||||||||||||| ||| ||| |||||||||
Sbjct: 23794 gatgggatttttggccagaataagtaaaccagaagtgatcttatccaaacgataacatgg 23853

                                                
Query: 745   g-gtactggatatccc-aagaatctttcaacagct 777
             | |||||||||||||| ||||||||||||||||||
Sbjct: 23854 gtgtactggatatcccaaagaatctttcaacagct 23888


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7000
Number of Sequences: 1807
Number of extensions: 7000
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)