BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZF02RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1588 1390 0.0
>3x_Contig1588
Length = 14692
Score = 1390 bits (701), Expect = 0.0
Identities = 775/797 (97%), Gaps = 2/797 (0%)
Strand = Plus / Minus
Query: 44 gctttgtcacaattgactagagaagacccctcccttgtggtaacacatgatgaggagact 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8551 gctttgtcacaattgactagagaagacccctcccttgtggtaacacatgatgaggagact 8492
Query: 104 ggacaaactttgttgagcggtatgggggagttacacttggatattgcgagagatagacta 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8491 ggacaaactttgttgagcggtatgggggagttacacttggatattgcgagagatagacta 8432
Query: 164 ttgaacgaattaaatgcacaagttgatgttgaaagagttattgtctcctacaaagaaaca 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8431 ttgaacgaattaaatgcacaagttgatgttgaaagagttattgtctcctacaaagaaaca 8372
Query: 224 ttaaatcattctacccaagaaaaaacgttggaaaccgatgatggatacaagattaccgct 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8371 ttaaatcattctacccaagaaaaaacgttggaaaccgatgatggatacaagattaccgct 8312
Query: 284 gtaatcgagccattggacgaagagatgaaagctaaagcgaagaaggacgaagaatggttc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8311 gtaatcgagccattggacgaagagatgaaagctaaagcgaagaaggacgaagaatggttc 8252
Query: 344 tcgttagcgaatgataataatttcatgatcatggaaaagcacaccaagtatgacccggat 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8251 tcgttagcgaatgataataatttcatgatcatggaaaagcacaccaagtatgacccggat 8192
Query: 404 aaaaactggcctttccaagtgccttatgttgctgtcgtgaatgcgttattaccaagttct 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8191 aaaaactggcctttccaagtgccttatgttgctgtcgtgaatgcgttattaccaagttct 8132
Query: 464 ctagttgcattacaaagaggaggtaagatcggtgggttcccattgagctcttgtgtcatt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8131 ctagttgcattacaaagaggaggtaagatcggtgggttcccattgagctcttgtgtcatt 8072
Query: 524 cgcattaaaaatgactgggatcttccaattgatgcgccatcgatttcaccattgttgact 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8071 cgcattaaaaatgactgggatcttccaattgatgcgccatcgatttcaccattgttgact 8012
Query: 584 ttaagcagacagctatttactcagatactcttatgagaagatcaatctaactactctgtt 643
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 8011 ttaagcagacagctatttactcagatactcttaggagaagatcaatctaactactctgtt 7952
Query: 644 ttagaaccagtcatgaatgtcgatgtcactgttcaacagcaagacatgggaccttgtatt 703
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 7951 ttagaaccagtcatgaatgtcgatgtcactgttcaacagcaagacatgggacctgttatt 7892
Query: 704 caagatctgtctagtgcaagataagc-aatatcttgtcctttgaagatgagaatcttaat 762
||||||||||||||||||||| |||| ||||||||||| |||||||||||||| ||||
Sbjct: 7891 caagatctgtctagtgcaagaaaagcaaatatcttgtctattgaagatgagaatactaat 7832
Query: 763 cctgttaccgagtctaac-ttagggtcccacacattgcagaacagatttggctgtcttag 821
|||| | |||||||||| | ||| ||| |||||||||||| |||| |||||| || ||
Sbjct: 7831 actgtcagcgagtctaacataaggttccaacacattgcagacaagatgtggctgcctgag 7772
Query: 822 gatcctactttaaaatt 838
|||||||||||| ||||
Sbjct: 7771 gatcctactttagaatt 7755
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6759
Number of Sequences: 1807
Number of extensions: 6759
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)