BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZF03FM1.SCF screened BAC_end
(893 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1384 1298 0.0
>3x_Contig1384
Length = 9372
Score = 1298 bits (655), Expect = 0.0
Identities = 710/723 (98%), Gaps = 4/723 (0%)
Strand = Plus / Plus
Query: 85 cttctgagttctataacggaagtatgtgtgtagtgtggctaatctttaataatggaaaat 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1375 cttctgagttctataacggaagtatgtgtgtagtgtggctaatctttaataatggaaaat 1434
Query: 145 ggtcacgggaccgacagtattaaatccagtttttttccttagaaatgtgtagaacttcgg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1435 ggtcacgggaccgacagtattaaatccagtttttttccttagaaatgtgtagaacttcgg 1494
Query: 205 cataagcagcatatttccaatcctcatctgttaagaaaataatgaggaattatgaacctt 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1495 cataagcagcatatttccaatcctcatctgttaagaaaataatgaggaattatgaacctt 1554
Query: 265 cacagaagtagagtcacagtagggcactgtgaacctgccgttactcgagcagttctgaag 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1555 cacagaagtagagtcacagtagggcactgtgaacctgccgttactcgagcagttctgaag 1614
Query: 325 tatagcaacttttgggattcaggatcgtgggtaagccatagtacgttgagaggtggaaag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1615 tatagcaacttttgggattcaggatcgtgggtaagccatagtacgttgagaggtggaaag 1674
Query: 385 atgatacgattttgcaggtcaattaagacattgcatactcctactcactttaccgatgcc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1675 atgatacgattttgcaggtcaattaagacattgcatactcctactcactttaccgatgcc 1734
Query: 445 actgttcggtctaatttgatgagtaaggtcaagttgttagacgaaatcttgagtcgtatt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1735 actgttcggtctaatttgatgagtaaggtcaagttgttagacgaaatcttgagtcgtatt 1794
Query: 505 agctatgatagaagcgtactatacaccccaaagtataaaagaataccgcagttggttacg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1795 agctatgatagaagcgtactatacaccccaaagtataaaagaataccgcagttggttacg 1854
Query: 565 gctaaagatacagtgcgtatgggtactttggttcgtaacttcattgataatatcacgatg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1855 gctaaagatacagtgcgtatgggtactttggttcgtaacttcattgataatatcacgatg 1914
Query: 625 gatcaagcctatgatgtgagtaaacaattggatcctaaggaaaaattagggaaagttggt 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1915 gatcaagcctatgatgtgagtaaacaattggatcctaaggaaaaattagggaaagttggt 1974
Query: 685 ttagagctgttcctcgaatgcattaaaaaccat-ttactcccgtgag-acccacctagct 742
|||||||||||||||||||||| |||||||||| ||||||| |||| |||||| |||||
Sbjct: 1975 ttagagctgttcctcgaatgcaataaaaaccatattactccgttgagtacccacttagct 2034
Query: 743 gtaatgatgttggatatccttaaatcgat-ttcccatgaggtcggatttttggaaatgtt 801
|||||||||||||||| | | ||||||| |||| ||||||||||||||||||||||| |
Sbjct: 2035 gtaatgatgttggata-cgtataatcgatattccaatgaggtcggatttttggaaatgat 2093
Query: 802 gct 804
|||
Sbjct: 2094 gct 2096
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5775
Number of Sequences: 1807
Number of extensions: 5775
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 893
length of database: 10,358,551
effective HSP length: 16
effective length of query: 877
effective length of database: 10,329,639
effective search space: 9059093403
effective search space used: 9059093403
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)