BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZF03RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1034 1146 0.0
>3x_Contig1034
Length = 3729
Score = 1146 bits (578), Expect = 0.0
Identities = 653/674 (96%), Gaps = 3/674 (0%)
Strand = Plus / Plus
Query: 49 ccgataagatcacgaggcacaaatgataatgtgccgagcaggaactgacactactttagt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1800 ccgataagatcacgaggcacaaatgataatgtgccgagcaggaactgacactactttagt 1859
Query: 109 acactgtttaacccagttatttgtaatcccgttcggtaaatcggtgatatatatttctct 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1860 acactgtttaacccagttatttgtaatcccgttcggtaaatcggtgatatatatttctct 1919
Query: 169 ttcactccagtcgaagtcccttctcagtagaagcctttgaggcatttttttaagagagaa 228
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1920 ttcactccagtcgaagtcccttctcagtagaagcctttgaggcaaaaagaaaagagagaa 1979
Query: 229 gcctttgagagtgaaatcatcatactgcgcttcggaaaaaagtgtcatcaataatgaacc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1980 gcctttgagagtgaaatcatcatactgcgcttcggaaaaaagtgtcatcaataatgaacc 2039
Query: 289 agagcaggaaatgctgtgcattatatgtggagcttccacggtggaaaataattgtggtga 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2040 agagcaggaaatgctgtgcattatatgtggagcttccacggtggaaaataattgtggtga 2099
Query: 349 gtcaagggttgtttgtgcttttattttgtacggcactgcactatttttgaaagattattg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2100 gtcaagggttgtttgtgcttttattttgtacggcactgcactatttttgaaagattattg 2159
Query: 409 tgcttaatatcagtacttaacacatcagtctgtttccatttgattaagaaagaaaaacta 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2160 tgcttaatatcagtacttaacacatcagtctgtttccatttgattaagaaagaaaaacta 2219
Query: 469 accagctgtgttgatagctagcagtttggccactggtgtataaaacctttgaagtgtatt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2220 accagctgtgttgatagctagcagtttggccactggtgtataaaacctttgaagtgtatt 2279
Query: 529 cattgccttagctctctccatttgcctatttgagcaaggagtcaaactcaaaggtgatta 588
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 2280 cattgccttagctctctccatttgcctatttgagcaaggagtcaaactcaagggtgataa 2339
Query: 589 tcatcggattaatcgttagattgagttattaataaagatggtttcgaagttctttggatt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2340 tcatcggattaatcgttagattgagttattaataaagatggtttcgaagttctttggatt 2399
Query: 649 cggttagagccagc-agaaatcatttagcgggttcgaacaaatacacgcagactttttcc 707
|||| |||| |||| ||||||||| |||||||| |||||| |||||||||| |||||
Sbjct: 2400 cggtaagag-cagcaagaaatcatctagcgggtcggaacaatcacacgcagac-atttcc 2457
Query: 708 acccggtcggcttc 721
||||| ||| ||||
Sbjct: 2458 acccgttcgtcttc 2471
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7838
Number of Sequences: 1807
Number of extensions: 7838
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)